Difference between revisions of "Main Page"

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(Updated open-source apps)
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<div style="border-bottom:1px solid #aae6ef; background-color:#aae6ef; padding:0.2em 0.5em 0.2em 0.5em; font-size:110%; font-weight:bold;-moz-border-radius:10px 10px 0 0; border-radius:10px 10px 0 0;">Open-source laboratory informatics software</div>
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Listed below are some of the most active and supported open-source laboratory informatics software projects with articles in the wiki, as of February 2013. Go [[:Category:Laboratory informatics software (open_source)|here]] for all listed open-source laboratory informatics projects.
Listed below are some of the most active and supported open-source laboratory informatics software projects with articles in the wiki, as of May 2014. Go [[:Category:Laboratory informatics software (open_source)|here]] for all listed open-source laboratory informatics projects.


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* [[LabKey Server]] via [[LabKey Corporation]]<br />
* [[LabKey Server]] via [[LabKey Corporation]]<br />
* [[Galaxy (biomedical software)|Galaxy]] via Penn State & Emory University<br />
* [[Galaxy (biomedical software)|Galaxy]] via Penn State & Emory University<br />
* [[Indigo ELN]] via GGA Software Services, LLC<br />
* [[LabTrove]] via University of Southampton<br />
* [[LabTrove]] via University of Southampton<br />
* [[openBIS]] via Center for Information Science and Databases - ETHZ<br />
* [[GNomEx]] via Huntsman Cancer Institute<br />
* [[openCDMS]] via University of Manchester<br />
* [[SeqWare]] via its dev team<br />
* [[OSCAR]] via OSCAR EMR<br />
* [[OSCAR]] via OSCAR EMR<br />
* [[OpenClinica]] via OpenClinica, LLC<br />
* [[eLabFTW]] via its developer Nicolas CARPi<br />
* [[open enventory]] via Technische Universität Kaiserslautern<br />
* [[OpenMRS]] via its dev team<br />
* [[OpenMRS]] via its dev team<br />
* [[OpenELIS]] via Univ. of Iowa and Univ. of Washington<br />
* [[eln]] via its developer Daniel Wagenaar
* [[GNomEx]] via Huntsman Cancer Institute<br />
&nbsp;<br />
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* [[SeqWare]] via its dev team<br />
* [[openCDMS]] via University of Manchester<br />
* [[GNU Health]] via GNU Solidario<br />
* [[openBIS]] via Center for Information Science and Databases - ETHZ<br />
* [[OpenEMR]] via its dev team<br />
* [[MISO]] via The Genome Analysis Centre<br />
* [[OpenELIS]] via Univ. of Iowa and Univ. of Washington<br />
* [[OpenChrom]] via its dev team<br />
* [[Indigo ELN]] via GGA Software Services, LLC<br />
* [[Krishagni Solutions Pvt. Ltd.|caTissue Plus]] via Krishagni Solutions<br />
* [[Krishagni Solutions Pvt. Ltd.|caTissue Plus]] via Krishagni Solutions<br />
* [[open enventory]] via Technische Universität Kaiserslautern<br />
* [[OpenClinica]] via OpenClinica, LLC<br />
* [[OpenChrom]] via its dev team<br />
* [[GNU Health]] via GNU Solidario<br />
* [[ms-lims]] via Ghent University and VIB<br />
* [[ms-lims]] via Ghent University and VIB<br />
* [[MISO]] via The Genome Analysis Centre<br />
* [[OpenEMR]] via its dev team<br />
* [[LabWiki]] via PHP Labware<br />
* [[LabWiki]] via PHP Labware<br />
* [[LabStoRe]] via PHP Labware<br />
* [[LabStoRe]] via PHP Labware
* [[Caisis]] via Caisis Foundation<br />
&nbsp;<br />
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Revision as of 18:12, 17 May 2014


Welcome to LIMSwiki.org, the laboratory, health, and science informatics encyclopedia.
Users have contributed: 3,164 articles.

LIMSwiki is a collaborative wiki dedicated to the scientific community, featuring organized, documented, and up-to-date content regarding all aspects of laboratory informatics, bioinformatics, and health informatics. LIMSwiki also strives to maintain relevant knowledge about laboratory equipment as well as commercial and open-source software likely to be used in a laboratory setting. This also includes the vendors of such equipment and software.

Like any community wiki, the value and success of LIMSwiki is dependent upon the scientific community contributing their vast knowledge through the creation of relevant articles and editing of existing articles where knowledge is absent. If you wish to enrich the content of this wiki or have something of value to add, please request an account and get started.


Get started
Featured article of the week

20120217 structure of the Austrian electronic health records (ELGA).jpg

An electronic health record (EHR) is an evolving concept, "defined as a longitudinal collection of electronic health information about individual patients and populations." It is a record in digital format that is theoretically capable of being shared across different health care settings. In some cases this sharing can occur by way of network-connected enterprise-wide information systems and other information networks or exchanges. EHRs may include a range of data, including demographics, medical history, medication and allergies, immunization status, laboratory test results, radiology images, vital signs, personal stats like age and weight, and billing information.

The differences between an EHR and an electronic medical record (EMR) differ from entity to entity and from country to country. For example, the U.S. Department of Health and Human Services (HHS) notes that despite the interchanging of the terms "EMR" and "EHR," it considers them two separate entities: the EMR came first, used primarily by medical clinicians for diagnosis and treatment, while the EHR came into existence as a more holistic, inclusive collection of a patient's health data. (Full article...)

Recently featured: Public health laboratory


Learn more
Key commercial laboratory informatics vendors

What does it mean to be "key" for the purpose of this ranking? The criterion for a vendor selling proprietary commercial laboratory informatics software being listed here: the vendor's LIMSwiki page must have a cited (from a publicly-available source) price list. Those with demonstration videos are given higher preference; items ranked by number of videos. Go here for all listed vendors in the wiki.


Laboratory informatics software and products
Key cloud- or SaaS-based laboratory informatics software

Listed below are key commercial and open-source laboratory informatics software offerings listed in the wiki that utilize the cloud or software as a service (SaaS) model. "Key" indicates vendor's (or software's) LIMSwiki page has a cited (from a publicly-available source) price list. Those with demonstration videos are given higher preference; items ranked by number of videos.

1. webLIMS via LabLynx, Inc.
2. Bika LIMS via Bika Lab Systems (Pty) Ltd.
3. Scilligence ELN via Scilligence Corporation
4. LabArchives via LabArchives, LLC
5. Contur ELN/iLabber via Accelrys, Inc.
6. eCAT via Research Innovations Limited
7. labfolder via labfolder GmbH
8. Labguru via BioData Inc.
9. iPad ELN via Cognium Systems SA
10. LABVANTAGE via LABVANTAGE Solutions, Inc.

11. NevisLIMS via Instrumentos Científicos SA
12. NoteBookMaker via NoteBookMaker, LLC
13. Sysment Notebook via Sysment Kft.
14. BioRails DM via The Edge Software Consultancy Ltd.
15. LABTrack via LABTrack, LLC
16. CloudLIMS via CloudLIMS.com, LLC
17. SparkLix via SparkLix Bio IT Corp.
18. SQUISH via Information Management Services, Inc.
19. Datacloud via SPLhost, Inc.
20. hivebench via shazino SAS


Open-source software

Looking for open-source software solutions to make your lab or office more efficient? Try these locations:

Additional LIMSwiki resources
Open-source laboratory informatics software

Listed below are some of the most active and supported open-source laboratory informatics software projects with articles in the wiki, as of May 2014. Go here for all listed open-source laboratory informatics projects.


Additional information
Latest news

April 30, 2014:

I wanted to highlight some of the projects we've worked on over the past few years. I feel like as the wiki grows, some of the tools buried within it tend to get lost. First, I'd like to again mention the LIMSwiki informatics resource portal. This project was dedicated to collating as many useful online scientific and health informatics-related materials and research tools as possible. It includes links to books, magazines, journals, blogs, organizations, special-interest groups, government entities, academic programs, conferences, trade shows, research tools, job boards, and a whole lot more related to laboratory, health, and other types of informatics. I can't stress enough how extensive we've tried to make this collection of resources.

We have other resources too that shouldn't go unnoticed:

Shawn Douglas (talk) 17:43, 30 April 2014 (EDT)

November 1, 2013:

We have a couple of brief updates to give you regarding the wiki. First, we've expanded the help section of the wiki by updating a few existing help pages and adding a few new ones. Additionally, we've added a new collection of MediaWiki training guides to 1. help users new to MediaWiki more rapidly make meaningful edits and 2. to further encourage new users to make wiki contributions. We hope you find the training guides and exercises useful. Second, we've upgraded to MediaWiki 1.21.2, added new extensions, and will be moving the content to what will hopefully be a more rapid server. All these upgrades should translate to a more functional and inviting informatics wiki. Happy wiki-ing!

Shawn Douglas (talk) 13:42, 1 November 2013 (EDT)

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