Difference between revisions of "Book:Next-Generation Sequencing: A Brief Introduction"
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;1. What Is DNA and Next-Generation Sequencing? | ;1. What Is DNA and Next-Generation Sequencing? | ||
:[[LII:Structural Biochemistry/DNA recombinant techniques/DNA sequencing|Basics of DNA sequencing]] | :[[LII:Structural Biochemistry/DNA recombinant techniques/DNA sequencing|Basics of DNA sequencing]] | ||
:[[DNA sequencing|Advanced DNA sequencing and next-generation methods]] | :[[DNA sequencing|Advanced DNA sequencing and next-generation methods]] | ||
:[[LII:Next Generation Sequencing (NGS)/Introduction|Next-generation sequencing technologies and terminology]] | :[[LII:Next Generation Sequencing (NGS)/Introduction|Next-generation sequencing technologies and terminology]] | ||
:[[LII:Next Generation Sequencing (NGS)/Big Data|NGS and big data]] | :[[LII:Next Generation Sequencing (NGS)/Big Data|NGS and big data]] | ||
;2. Bioinformatics Interfaces for Next-Generation Sequencing | ;2. Bioinformatics Interfaces for Next-Generation Sequencing | ||
:[[LII:Next Generation Sequencing (NGS)/Bioinformatics from the outside|Bioinformatics from the outside]] | :[[LII:Next Generation Sequencing (NGS)/Bioinformatics from the outside|Bioinformatics from the outside]] | ||
:[[LII:Next Generation Sequencing (NGS)/Pre-processing|Pre-processing of NGS data]] | :[[LII:Next Generation Sequencing (NGS)/Pre-processing|Pre-processing of NGS data]] | ||
;3. Next-Generation Sequencing Using a Reference Genome | ;3. Next-Generation Sequencing Using a Reference Genome | ||
:[[LII:Next Generation Sequencing (NGS)/Alignment|Alignment]] | :[[LII:Next Generation Sequencing (NGS)/Alignment|Alignment]] | ||
:[[LII:Next Generation Sequencing (NGS)/DNA Variants|DNA variants]] | :[[LII:Next Generation Sequencing (NGS)/DNA Variants|DNA variants]] | ||
| Line 31: | Line 26: | ||
:[[LII:Next Generation Sequencing (NGS)/Epigenetics|Epigenetics]] | :[[LII:Next Generation Sequencing (NGS)/Epigenetics|Epigenetics]] | ||
:[[LII:Next Generation Sequencing (NGS)/Metagenomics|Metagenomics]] | :[[LII:Next Generation Sequencing (NGS)/Metagenomics|Metagenomics]] | ||
;4. Next-Generation Sequencing without a Reference Genome | ;4. Next-Generation Sequencing without a Reference Genome | ||
:[[LII:Next Generation Sequencing (NGS)/De novo assembly|''De novo'' genome assembly]] | :[[LII:Next Generation Sequencing (NGS)/De novo assembly|''De novo'' genome assembly]] | ||
:[[LII:Next Generation Sequencing (NGS)/De novo RNA assembly|''De novo'' RNA assembly]] | :[[LII:Next Generation Sequencing (NGS)/De novo RNA assembly|''De novo'' RNA assembly]] | ||
;5. Next-Generation Sequencing Research and Technology | ;5. Next-Generation Sequencing Research and Technology | ||
:[[LII:Next Generation Sequencing (NGS)/Genome-Wide Association Studies|Genome-wide association studies: An introduction]] | |||
:[[LII:Next Generation Sequencing (NGS)/Genome Wide Association Studies|Genome-wide association studies: An introduction]] | |||
:[[Genome-wide association study|The genome-wide association study]] | :[[Genome-wide association study|The genome-wide association study]] | ||
:[[LII:Next Generation Sequencing (NGS)/Integrative platforms|Open-source integrative platforms]] | :[[LII:Next Generation Sequencing (NGS)/Integrative platforms|Open-source integrative platforms]] | ||
;6. The Rest | ;6. The Rest | ||
:[[LII:Next Generation Sequencing (NGS)/Authors|Contributing authors]] | :[[LII:Next Generation Sequencing (NGS)/Authors|Contributing authors]] | ||
Latest revision as of 15:04, 7 December 2018
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Next-Generation Sequencing: A Brief Introduction
The goal of this short volume is to act as "a collective lab book that explains the key concepts and describes best practices in NGS" or next generation sequencing. The content originates from Wikibooks and is made available under the Creative Commons Attribution-ShareAlike 3.0 Unported license.
- 1. What Is DNA and Next-Generation Sequencing?
- Basics of DNA sequencing
- Advanced DNA sequencing and next-generation methods
- Next-generation sequencing technologies and terminology
- NGS and big data
- 2. Bioinformatics Interfaces for Next-Generation Sequencing
- Bioinformatics from the outside
- Pre-processing of NGS data
- 3. Next-Generation Sequencing Using a Reference Genome
- Alignment
- DNA variants
- RNA
- Epigenetics
- Metagenomics
- 4. Next-Generation Sequencing without a Reference Genome
- De novo genome assembly
- De novo RNA assembly
- 5. Next-Generation Sequencing Research and Technology
- Genome-wide association studies: An introduction
- The genome-wide association study
- Open-source integrative platforms
- 6. The Rest
- Contributing authors
