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{{Saved book | {{Saved book | ||
|title=The Complete Guide to LIMS and Laboratory Informatics | |title=The Complete Guide to LIMS and Laboratory Informatics | ||
|subtitle= | |subtitle=2024 Edition | ||
|cover-image= | |cover-image=Fig3 Liscouski SciStudGuideLabInfo23.png | ||
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'''Title''': ''The Complete Guide to LIMS and Laboratory Informatics'' | |||
:[[ | '''Edition''': 2024 Edition | ||
; | |||
'''Author for citation''': Shawn E. Douglas | |||
'''License for content''': [https://creativecommons.org/licenses/by-sa/4.0/ Creative Commons Attribution-ShareAlike 4.0 International] | |||
'''Publication date''': January 2024 | |||
[[Laboratory informatics]] solutions are as unique as the [[Laboratory|laboratories]] that depend on them, coming in many "flavors." Sorting through this great variety of systems can be a daunting task. Add in the fact that many laboratories don't have the personnel who understand every nuance of laboratory informatics and the [[laboratory information management system]] (LIMS) or [[laboratory information system]] (LIS) they require, and it quickly becomes obvious that finding the ideal LIMS is no simple task. | |||
This annually updated guide provides a comprehensive and informative body of knowledge as it relates to the laboratory and implementing informatics solutions within it. From the software, hardware, and data management side of laboratory informatics to considerations towards security, acquisition, and implementation of the ideal solution, the reader is provided with a wealth of knowledge to better guide their LIMS and laboratory informatics decisions. | |||
;1. Informatics in the laboratory | |||
:[[Information]] | :[[Information]] | ||
:[[Informatics (academic field)]] | :[[Informatics (academic field)]] | ||
:[[Laboratory]] | :[[Laboratory]] | ||
:[[Laboratory informatics]] | :[[Laboratory informatics]] | ||
; | ;2. Informatics across the sciences | ||
:[[Biodiversity informatics]] | |||
:[[Bioinformatics]] | :[[Bioinformatics]] | ||
:[[Cancer informatics]] | :[[Cancer informatics]] | ||
| Line 25: | Line 38: | ||
:[[Health informatics]] | :[[Health informatics]] | ||
:[[Imaging informatics]] | :[[Imaging informatics]] | ||
:[[ | :[[Infectious disease informatics]] | ||
:[[ | :[[Materials informatics]] | ||
:[[Public health informatics]] | :[[Public health informatics]] | ||
; | ;3. All about LIMS and LIS | ||
:[[Laboratory information management system]] | :[[Laboratory information management system]] | ||
:[[LIMS feature]] | :[[LIMS feature]] | ||
:[[Laboratory information system]] | :[[Laboratory information system]] | ||
:[[LIS feature]] | :[[LIS feature]] | ||
; | ;4. Other laboratory informatics and support applications | ||
:[[Chromatography data system]] | :[[Chromatography data system]] | ||
:[[Document management system]] | :[[Document management system]] | ||
:[[Electronic data capture|Electronic data capture system]] | :[[Electronic data capture|Electronic data capture system]] | ||
:[[Electronic health record]] | |||
:[[Electronic laboratory notebook]] | :[[Electronic laboratory notebook]] | ||
:[[Enterprise resource planning|Enterprise resource planning system]] | :[[Enterprise resource planning|Enterprise resource planning system]] | ||
:[[Laboratory execution system]] | :[[Laboratory execution system]] | ||
:[[Picture archiving and communication system]] | :[[Picture archiving and communication system]] | ||
:[[Radiology information system]] | |||
:[[Scientific data management system]] | :[[Scientific data management system]] | ||
; | :[[Workflow engine]] | ||
;5. Laboratory informatics considerations: Software and hardware | |||
:''[[LII:Notes on Instrument Data Systems|Notes on Instrument Data Systems]]'' | :''[[LII:Notes on Instrument Data Systems|Notes on Instrument Data Systems]]'' | ||
:[[Application programming interface]] | :[[Application programming interface]] | ||
:[[Cloud computing]] | :[[Cloud computing]] | ||
:[[Data center]] | |||
:[[Desktop virtualization]] | :[[Desktop virtualization]] | ||
:[[Distributed computing]] | :[[Distributed computing]] | ||
| Line 56: | Line 73: | ||
:[[Scientific instrument]] | :[[Scientific instrument]] | ||
:[[Software as a service]] | :[[Software as a service]] | ||
; | ;6. Laboratory informatics considerations: Data management and security | ||
:[[Audit trail]] | :[[Audit trail]] | ||
:[[Backup]] | :[[Backup]] | ||
| Line 66: | Line 83: | ||
:[[Data mapping]] | :[[Data mapping]] | ||
:[[Data migration]] | :[[Data migration]] | ||
:[[Data recovery]] | |||
:[[Data retention]] | :[[Data retention]] | ||
:[[Data visualization]] | :[[Data visualization]] | ||
| Line 74: | Line 92: | ||
:[[Information security]] | :[[Information security]] | ||
:[[Information security management]] | :[[Information security management]] | ||
:[[Information technology security audit]] | |||
:[[IT risk management]] | |||
:[[Master data]] | :[[Master data]] | ||
:[[Metadata]] | :[[Metadata]] | ||
:[[Network security]] | :[[Network security]] | ||
:[[Retention period]] | :[[Retention period]] | ||
:[[Security as a service]] | |||
:[[Single sign-on]] | :[[Single sign-on]] | ||
:[[Web application security]] | :[[Web application security]] | ||
; | ;7. Laboratory informatics considerations: Data, system, and process quality | ||
:[[Conformance testing]] | |||
:[[Control chart]] | |||
:[[Corrective and preventive action]] | :[[Corrective and preventive action]] | ||
:[[Data integrity]] | :[[Data integrity]] | ||
| Line 87: | Line 110: | ||
:[[Good Automated Manufacturing Practice]] | :[[Good Automated Manufacturing Practice]] | ||
:[[Lean laboratory]] | :[[Lean laboratory]] | ||
:[[Nonconformity (quality)]] | |||
:[[Quality (business)]] | |||
:[[Quality assurance]] | :[[Quality assurance]] | ||
:[[Quality control]] | :[[Quality control]] | ||
:[[Quality management system]] | :[[Quality management system]] | ||
:[[Software quality]] | :[[Software quality]] | ||
; | :[[Software quality management]] | ||
;8. Laboratory informatics considerations: Automation | |||
:''[[LII:Considerations in the Automation of Laboratory Procedures|Considerations in the Automation of Laboratory Procedures]]'' | :''[[LII:Considerations in the Automation of Laboratory Procedures|Considerations in the Automation of Laboratory Procedures]]'' | ||
:[[Artificial intelligence]] | :[[Artificial intelligence]] | ||
:[[Barcode]] | :[[Barcode]] | ||
:[[Concept processing]] | |||
:[[Data exchange]] | :[[Data exchange]] | ||
:[[Data integration]] | :[[Data integration]] | ||
| Line 101: | Line 128: | ||
:[[Internet of things]] | :[[Internet of things]] | ||
:[[Inventory control]] | :[[Inventory control]] | ||
:[[Knowledge representation and reasoning]] | |||
:[[Laboratory automation]] | :[[Laboratory automation]] | ||
:[[Machine learning]] | :[[Machine learning]] | ||
| Line 107: | Line 135: | ||
:[[SCADA]] | :[[SCADA]] | ||
:[[System integration]] | :[[System integration]] | ||
; | ;9. Laboratory informatics considerations: Acquisition and implementation | ||
:''[[LII:Laboratory Informatics Software Acquisition and Implementation Considerations|Laboratory Informatics Software Acquisition and Implementation Considerations]]'' | :''[[LII:Laboratory Informatics Software Acquisition and Implementation Considerations|Laboratory Informatics Software Acquisition and Implementation Considerations]]'' | ||
:[[Acceptance testing]] | |||
:[[Business intelligence]] | :[[Business intelligence]] | ||
:[[Concurrent user]] | |||
:[[Change control]] | :[[Change control]] | ||
:[[Functional requirement]] | :[[Functional requirement]] | ||
:[[Request for information]] | |||
:[[Risk assessment]] | :[[Risk assessment]] | ||
:[[Stakeholder analysis]] | :[[Stakeholder analysis]] | ||
:[[Systems development life cycle]] | :[[Systems development life cycle]] | ||
:[[Workflow]] | :[[Workflow]] | ||
; | ;10. Related standards and regulatory considerations | ||
:[[21 CFR Part 11]] | :[[21 CFR Part 11]] | ||
:[[40 CFR Part 3]] | :[[40 CFR Part 3]] | ||
| Line 124: | Line 155: | ||
:[[Health Insurance Portability and Accountability Act]] | :[[Health Insurance Portability and Accountability Act]] | ||
:[[Health Level 7]] | :[[Health Level 7]] | ||
:[[ISO 15189]] | |||
:[[ISO 9000]] | :[[ISO 9000]] | ||
:[[ISO/IEC 12207]] | :[[ISO/IEC 12207]] | ||
| Line 129: | Line 161: | ||
:[[Regulatory compliance]] | :[[Regulatory compliance]] | ||
:[[The NELAC Institute]] | :[[The NELAC Institute]] | ||
; | ;11. Laboratory informatics resources | ||
:''[[LII:A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work|A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work]]'' | :''[[LII:A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work|A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work]]'' | ||
:''[[LII:Directions in Laboratory Systems: One Person's Perspective|Directions in Laboratory Systems: One Person's Perspective]]'' | |||
:''[[LII:A Science Student's Guide to Laboratory Informatics|A Science Student's Guide to Laboratory Informatics]]'' | |||
:''[[LII:The Application of Informatics to Scientific Work: Laboratory Informatics for Newbies|The Application of Informatics to Scientific Work: Laboratory Informatics for Newbies]]'' | |||
:''[[LII:Justifying LIMS Acquisition and Deployment within Your Organization|Justifying LIMS Acquisition and Deployment within Your Organization]]'' | |||
:''[[LII:Laboratory Information Systems Project Management: A Guidebook for International Implementations|Laboratory Information Systems Project Management: A Guidebook for International Implementations]]'' | :''[[LII:Laboratory Information Systems Project Management: A Guidebook for International Implementations|Laboratory Information Systems Project Management: A Guidebook for International Implementations]]'' | ||
:''[[Book:LIMSpec 2022 R2|LIMSpec 2022 R2]]'' | |||
:''[[Book:LIMSpec | |||
:[[Laboratory informatics software (open source)|Open-source laboratory informatics software]] | :[[Laboratory informatics software (open source)|Open-source laboratory informatics software]] | ||
<!--Place all category tags here--> | <!--Place all category tags here--> | ||
[[Category:LIMSwiki books (community books)|Complete Guide to LIMS and Laboratory Informatics]] | |||
[[Category:LIMSwiki books on informatics]] | [[Category:LIMSwiki books on informatics]] | ||
Latest revision as of 17:14, 10 January 2024
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Title: The Complete Guide to LIMS and Laboratory Informatics
Edition: 2024 Edition
Author for citation: Shawn E. Douglas
License for content: Creative Commons Attribution-ShareAlike 4.0 International
Publication date: January 2024
Laboratory informatics solutions are as unique as the laboratories that depend on them, coming in many "flavors." Sorting through this great variety of systems can be a daunting task. Add in the fact that many laboratories don't have the personnel who understand every nuance of laboratory informatics and the laboratory information management system (LIMS) or laboratory information system (LIS) they require, and it quickly becomes obvious that finding the ideal LIMS is no simple task.
This annually updated guide provides a comprehensive and informative body of knowledge as it relates to the laboratory and implementing informatics solutions within it. From the software, hardware, and data management side of laboratory informatics to considerations towards security, acquisition, and implementation of the ideal solution, the reader is provided with a wealth of knowledge to better guide their LIMS and laboratory informatics decisions.
- 1. Informatics in the laboratory
- Information
- Informatics (academic field)
- Laboratory
- Laboratory informatics
- 2. Informatics across the sciences
- Biodiversity informatics
- Bioinformatics
- Cancer informatics
- Chemical informatics
- Environmental informatics
- Genome informatics
- Health informatics
- Imaging informatics
- Infectious disease informatics
- Materials informatics
- Public health informatics
- 3. All about LIMS and LIS
- Laboratory information management system
- LIMS feature
- Laboratory information system
- LIS feature
- 4. Other laboratory informatics and support applications
- Chromatography data system
- Document management system
- Electronic data capture system
- Electronic health record
- Electronic laboratory notebook
- Enterprise resource planning system
- Laboratory execution system
- Picture archiving and communication system
- Radiology information system
- Scientific data management system
- Workflow engine
- 5. Laboratory informatics considerations: Software and hardware
- Notes on Instrument Data Systems
- Application programming interface
- Cloud computing
- Data center
- Desktop virtualization
- Distributed computing
- Interface (computing)
- Internationalization and localization
- Message broker
- Middleware
- Modularity
- Platform as a service
- Scientific instrument
- Software as a service
- 6. Laboratory informatics considerations: Data management and security
- Audit trail
- Backup
- Blockchain
- Cloud computing security
- Computer security
- Data analysis
- Data exchange
- Data mapping
- Data migration
- Data recovery
- Data retention
- Data visualization
- Electronic signature
- Encryption
- Information management
- Information privacy
- Information security
- Information security management
- Information technology security audit
- IT risk management
- Master data
- Metadata
- Network security
- Retention period
- Security as a service
- Single sign-on
- Web application security
- 7. Laboratory informatics considerations: Data, system, and process quality
- Conformance testing
- Control chart
- Corrective and preventive action
- Data integrity
- Data quality
- Good Automated Laboratory Practices
- Good Automated Manufacturing Practice
- Lean laboratory
- Nonconformity (quality)
- Quality (business)
- Quality assurance
- Quality control
- Quality management system
- Software quality
- Software quality management
- 8. Laboratory informatics considerations: Automation
- Considerations in the Automation of Laboratory Procedures
- Artificial intelligence
- Barcode
- Concept processing
- Data exchange
- Data integration
- Data mining
- Environmental monitoring
- Internet of things
- Inventory control
- Knowledge representation and reasoning
- Laboratory automation
- Machine learning
- Predictive maintenance
- Remote data capture
- SCADA
- System integration
- 9. Laboratory informatics considerations: Acquisition and implementation
- Laboratory Informatics Software Acquisition and Implementation Considerations
- Acceptance testing
- Business intelligence
- Concurrent user
- Change control
- Functional requirement
- Request for information
- Risk assessment
- Stakeholder analysis
- Systems development life cycle
- Workflow
- 10. Related standards and regulatory considerations
- 21 CFR Part 11
- 40 CFR Part 3
- ANSI-ASQ National Accreditation Board
- ASTM E1578
- Clinical Laboratory Improvement Amendments
- Health Insurance Portability and Accountability Act
- Health Level 7
- ISO 15189
- ISO 9000
- ISO/IEC 12207
- ISO/IEC 17025
- Regulatory compliance
- The NELAC Institute
- 11. Laboratory informatics resources
- A Guide for Management: Successfully Applying Laboratory Systems to Your Organization's Work
- Directions in Laboratory Systems: One Person's Perspective
- A Science Student's Guide to Laboratory Informatics
- The Application of Informatics to Scientific Work: Laboratory Informatics for Newbies
- Justifying LIMS Acquisition and Deployment within Your Organization
- Laboratory Information Systems Project Management: A Guidebook for International Implementations
- LIMSpec 2022 R2
- Open-source laboratory informatics software
