Difference between revisions of "Template:Article of the week"

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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1.1 Davis FrontBioinfo2022 40.jpg|240px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Scroggie DigDisc2023 2.gif|240px]]</div>
'''"[[Journal:ApE, A Plasmid Editor: A freely available DNA manipulation and visualization program|ApE, A Plasmid Editor: A freely available DNA manipulation and visualization program]]"'''
'''"[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration]]"'''


A Plasmid Editor (ApE) is a free, multi-platform application for [[Data visualization|visualizing]], designing, and presenting biologically relevant [[DNA sequencing|DNA sequences]]. ApE provides a flexible framework for annotating a sequence manually or using a user-defined library of features. ApE can be used in designing [[plasmid]]s and other constructs via ''in silico'' simulation of cloning methods such as [[polymerase chain reaction]] (PCR), Gibson assembly, restriction-ligation assembly, and Golden Gate assembly. In addition, ApE provides a platform for creating visually appealing linear and circular plasmid maps. It is available for Mac, PC, and Linux-based platforms ... ('''[[Journal:ApE, A Plasmid Editor: A freely available DNA manipulation and visualization program|Full article...]]''')<br />
[[Electronic laboratory notebook]]s (ELNs) have expanded the utility of the paper [[laboratory notebook]] beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and [[Data integrity|integrity]]. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used [[LabTrove]] and [[LabArchives, LLC|LabArchives]] as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... ('''[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|Full article...]]''')<br />
''Recently featured'':
''Recently featured'':
{{flowlist |
{{flowlist |
* [[Journal:Development and national scale implementation of an open-source electronic laboratory information system (OpenELIS) in Côte d’Ivoire: Sustainability lessons from the first 13 years|Development and national scale implementation of an open-source electronic laboratory information system (OpenELIS) in Côte d’Ivoire: Sustainability lessons from the first 13 years]]
* [[Journal:SODAR: Managing multiomics study data and metadata|SODAR: Managing multiomics study data and metadata]]
* [[Journal:AI4Green: An open-source ELN for green and sustainable chemistry|AI4Green: An open-source ELN for green and sustainable chemistry]]
* [[Journal:Benefits of information technology in healthcare: Artificial intelligence, internet of things, and personal health records|Benefits of information technology in healthcare: Artificial intelligence, internet of things, and personal health records]]
* [[Journal:The modeling of laboratory information systems in higher education based on enterprise architecture planning (EAP) for optimizing monitoring and equipment maintenance|The modeling of laboratory information systems in higher education based on enterprise architecture planning (EAP) for optimizing monitoring and equipment maintenance]]
* [[Journal:A quality assurance discrimination tool for the evaluation of satellite laboratory practice excellence in the context of European regulatory meat inspection for Trichinella spp.|A quality assurance discrimination tool for the evaluation of satellite laboratory practice excellence in the context of European regulatory meat inspection for ''Trichinella spp.'']]
}}
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Revision as of 16:20, 26 March 2024

Fig1 Scroggie DigDisc2023 2.gif

"GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration"

Electronic laboratory notebooks (ELNs) have expanded the utility of the paper laboratory notebook beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and integrity. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used LabTrove and LabArchives as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... (Full article...)
Recently featured: