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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig3 Snyder PLOSDigHlth22 1-11.png|240px]]</div>
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'''"[[Journal:From months to minutes: Creating Hyperion, a novel data management system expediting data insights for oncology research and patient care|From months to minutes: Creating Hyperion, a novel data management system expediting data insights for oncology research and patient care]]"'''
'''"[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration]]"'''


Ensuring timely access to accurate data is critical for the functioning of a [[cancer]] center. Despite overlapping data needs, data are often fragmented and sequestered across multiple systems (such as the [[electronic health record]] [EHR], state and federal registries, and research [[database]]s), creating high barriers to data access for clinicians, researchers, administrators, quality officers, and patients. The creation of [[System integration|integrated data systems]] also faces technical, leadership, cost, and human resource barriers, among others. The University of Rochester's James P. Wilmot Cancer Institute (WCI) hired a small team of individuals with both technical and clinical expertise to develop a custom [[Information management|data management]] software platform—Hyperion— addressing five challenges: lowering the skill level required to maintain the system, reducing costs, allowing users to access data autonomously, optimizing [[Information security|data security]] and utilization, and shifting technological team structure to encourage rapid innovation ... ('''[[Journal:From months to minutes: Creating Hyperion, a novel data management system expediting data insights for oncology research and patient care|Full article...]]''')<br />
[[Electronic laboratory notebook]]s (ELNs) have expanded the utility of the paper [[laboratory notebook]] beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and [[Data integrity|integrity]]. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used [[LabTrove]] and [[LabArchives, LLC|LabArchives]] as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... ('''[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|Full article...]]''')<br />
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Revision as of 16:20, 26 March 2024

Fig1 Scroggie DigDisc2023 2.gif

"GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration"

Electronic laboratory notebooks (ELNs) have expanded the utility of the paper laboratory notebook beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and integrity. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used LabTrove and LabArchives as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... (Full article...)
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