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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig7 Maury FrontDigHlth2021 3.jpg|240px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Scroggie DigDisc2023 2.gif|240px]]</div>
'''"[[Journal:An automated dashboard to improve laboratory COVID-19 diagnostics management|An automated dashboard to improve laboratory COVID-19 diagnostics management]]"'''
'''"[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration]]"'''


In response to the [[COVID-19]] [[pandemic]], our microbial diagnostic [[laboratory]] located in a university [[hospital]] has implemented several distinct [[SARS-CoV-2]] [[reverse transcription polymerase chain reaction]] (RT-PCR) systems in a very short time. More than 148,000 tests have been performed over 12 months, which represents about 405 tests per day, with peaks to more than 1,500 tests per days during the second wave. This was only possible thanks to [[Laboratory automation|automation]] and digitalization, to allow high-throughput, acceptable time to results and to maintain test reliability. An automated dashboard was developed to give access to key performance indicators (KPIs) to improve laboratory operational management. RT-PCR data extraction of four respiratory viruses—SARS-CoV-2, influenza A and B, and RSV—from our [[laboratory information system]] (LIS) was automated. This included ... ('''[[Journal:An automated dashboard to improve laboratory COVID-19 diagnostics management|Full article...]]''')<br />
[[Electronic laboratory notebook]]s (ELNs) have expanded the utility of the paper [[laboratory notebook]] beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and [[Data integrity|integrity]]. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used [[LabTrove]] and [[LabArchives, LLC|LabArchives]] as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... ('''[[Journal:GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration|Full article...]]''')<br />
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Revision as of 16:20, 26 March 2024

Fig1 Scroggie DigDisc2023 2.gif

"GitHub as an open electronic laboratory notebook for real-time sharing of knowledge and collaboration"

Electronic laboratory notebooks (ELNs) have expanded the utility of the paper laboratory notebook beyond that of a simple record keeping tool. Open ELNs offer additional benefits to the scientific community, including increased transparency, reproducibility, and integrity. A key element underpinning these benefits is facile and expedient knowledge sharing which aids communication and collaboration. In previous projects, we have used LabTrove and LabArchives as open ELNs, in partnership with GitHub (an open-source web-based platform originally developed for collaborative coding) for communication and discussion. Here we present our personal experiences using GitHub as the central platform for many aspects of the scientific process ... (Full article...)
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