MISO
| Developer(s) | The Genome Analysis Centre |
|---|---|
| Initial release | May 31, 2012 (0.1.6)[1] |
| Stable release |
2.10.1 (December 14, 2023) [±] |
| Preview release | none [±] |
| Written in | Java |
| Operating system | platform-independent |
| Type | Laboratory informatics software |
| License(s) | GNU Public License v3.0[1] |
| Website | https://miso-lims.github.io/miso-lims/ |
MISO is a laboratory information management system (LIMS) that handles next-generation sequencing experiments, including tracking and recording sequencing metadata. It is open-source and freely available on Github[2].
History
MISO development began in 2010 by the Davey group at Earlham Institute. The first beta, free open-source version community release became available in 2012 [3][4][5].
In 2015, the Ontario Institute for Cancer Research (OICR) chose MISO as their new LIMS system and began to develop it to meet their needs[6]. The teams at Earlham and OICR worked out a development plan to better support multiple institutes with the same code base[7].
Features
MISO is a full-featured LIMS system that concentrates on tracking samples and laboratory processes for modern DNA and RNA sequencing from a number of platforms, including Illumina, PacBio, and Oxford Nanopore. The full list of features is available in the User Manual[8].
Media and news
- July 2012: ISMB 2012 presentation[9] and poster[10]. MISO: An open-source LIMS for next-generation sequencing centres.
- July 2016 : BOSC 2016 presentation[11][12] Enhancements to MISO: an open-source community-driven LIMS
External links
References
- ↑ 1.0 1.1 "MISO 0.1.6RC User Manual" (pdf). The Genome Analysis Centre. 2012. pp. 2–3. https://web.archive.org/web/20160429075804/http://www.tgac.ac.uk/misofiles/MISO-01.6.RC-User_Manual.pdf. Retrieved 30 September 2012.
- ↑ {{cite web |url=https://github.com/miso-lims/miso-lims%7Ctitle=miso-lims/miso-lims : MISO: An open-source LIMS for NGS sequencing centres|accessdate=7 May 2019
- ↑ ""Release 0.1.6 on Github"". 26 July 2012. https://github.com/miso-lims/miso-lims/releases/tag/0.1.6. Retrieved 7 May 2019.
- ↑ Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario (2012). "MISO: an open-source LIMS for small-to-large sequencing centres" (PDF). Faculty of 1000 Ltd. http://cdn.f1000.com/posters/docs/250776676. Retrieved 7 May 2019.
- ↑ "TGAC launches MISO: A free open source LIMS for NGS". The Genome Analysis Centre. 23 July 2012. https://web.archive.org/web/20120731152633/http://www.tgac.ac.uk/news/31/68/TGAC-launches-MISO-A-free-open-source-LIMS-for-NGS/. Retrieved 30 September 2012.
- ↑ "Contributors to miso-lims/miso-lims". https://github.com/miso-lims/miso-lims/graphs/contributors?from=2014-04-26&to=2016-06-17&type=c. Retrieved 7 May 2019.
- ↑ "International collaboration cooks up powerful new software: MISO". https://news.oicr.on.ca/2017/02/international-collaboration-cooks-up-powerful-new-software-miso/.
- ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 8.17 8.18 8.19 8.20 8.21 8.22 8.23 8.24 8.25 8.26 8.27 8.28 ""MISO: User Manual"". https://miso-lims.github.io/miso-lims/usr/user-manual-table-of-contents.html. Retrieved 7 May 2019.
- ↑ Robert Davey. "MISO: An open-source LIMS for next-generation sequencing centres". https://f1000research.com/slides/1092117. Retrieved 7 May 2019.
- ↑ Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario (2012). "MISO: an open-source LIMS for small-to-large sequencing centres" (PDF). Faculty of 1000 Ltd. https://f1000research.com/posters/1092116. Retrieved 30 September 2012.
- ↑ Template:Cite url
- ↑ Masella, Andre; Taschuk, Morgan; Armstrong, Heather; Cooke, Dillan; Debat, Tony; Davey, Robert; Salt, Chris. "Enhancements to MISO: an open-source community-driven LIMS". F1000Research. https://f1000research.com/slides/5-1608.
