Difference between revisions of "MISO"
Shawndouglas (talk | contribs) (Created article stub.) |
Shawndouglas (talk | contribs) m (→Further reading: Corrected entry.) |
||
| Line 61: | Line 61: | ||
==Further reading== | ==Further reading== | ||
* {{cite web |url=http://cdn.f1000.com/posters/docs/250776676 |format=PDF |title=MISO: an open-source LIMS for small-to-large sequencing centres |author=Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario |publisher=Faculty of 1000 Ltd |date=2012 |accessdate=30 September 2012}} | * {{cite web |url=http://cdn.f1000.com/posters/docs/250776676 |format=PDF |title=MISO: an open-source LIMS for small-to-large sequencing centres |author=Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario |publisher=Faculty of 1000 Ltd |date=2012 |accessdate=30 September 2012}} | ||
==External links== | ==External links== | ||
Revision as of 19:39, 30 September 2012
| Developer(s) | The Genome Analysis Centre |
|---|---|
| Initial release | May 31, 2012 (0.1.6)[1] |
| Stable release |
2.10.1 (December 14, 2023) [±] |
| Preview release | none [±] |
| Written in | Java |
| Operating system | platform-independent |
| Type | Laboratory informatics software |
| License(s) | GNU Public License v3.0[1] |
| Website | www.tgac.ac.uk/miso |
MISO is a modular laboratory information management system (LIMS) that handles next-generation sequencing experiments, including the tracking and recording of sequencing metadata.
Product history
Development for MISO began in February 2010 by Dr. Robert Davey and the Core Bioinformatics Team of The Genome Analysis Centre, located in the United Kingdom. The first release of MISO occurred internally on September 19, 2011, beginning with version 0.1.1 (Hydrogen). Once several revisions took place, the software was released as free open-source software on May 31, 2012, represented as version 0.1.6 (Carbon).[1] On July 15, Dr. Davey presented MISO to attendees of the 20th Annual International Conference on Intelligent Systems for Molecular Biology, demonstrating installation, developmental insight, and future features.[2][3]
Features
Features of MISO include[4][3]:
- user-centric authentication
- extensive laboratory tracking
- barcode and print support
- monitoring and reporting of analytical processes
- data visualization
- notifications
- automated data/metadata submissions
- simple sample and library preparation workflows
- alerts
- extensibility (in a later update)
Hardware/software requirements
To install MISO, it's recommended the user have the ability to install Virtualbox software.
Please reference the README for more details on installation and configuration via Virtualbox.
Videos, screenshots, and other media
An online demo of MISO can be found here.
The user manual is also full of useful information.
Entities using MISO
Further reading
- Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario (2012). "MISO: an open-source LIMS for small-to-large sequencing centres" (PDF). Faculty of 1000 Ltd. http://cdn.f1000.com/posters/docs/250776676. Retrieved 30 September 2012.
External links
References
- ↑ 1.0 1.1 1.2 "MISO 0.1.6RC User Manual" (pdf). The Genome Analysis Centre. 2012. pp. 2–3. http://www.tgac.ac.uk/misofiles/MISO-01.6.RC-User_Manual.pdf. Retrieved 30 September 2012.
- ↑ "ISMB 2012 - Technology Track Schedule". International Society for Computational Biology, Inc. 2012. https://www.iscb.org/cms_addon/conferences/ismb2012/technologytrack.php. Retrieved 30 September 2012.
- ↑ 3.0 3.1 "TGAC launches MISO: A free open source LIMS for NGS". The Genome Analysis Centre. 23 July 2012. http://www.tgac.ac.uk/news/31/68/TGAC-launches-MISO-A-free-open-source-LIMS-for-NGS/. Retrieved 30 September 2012.
- ↑ Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario (2012). "MISO: an open-source LIMS for small-to-large sequencing centres" (PDF). Faculty of 1000 Ltd. http://cdn.f1000.com/posters/docs/250776676. Retrieved 30 September 2012.
