Difference between revisions of "LIIS"

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| developer              = Matt Forster
| developer              = Matt Forster
| released              = {{Start date|2013|08|28}} (0.10.1)<ref name="LIISStart">{{cite web |url=https://github.com/forstermatth/LIIS/releases |title=LIIS > releases |publisher=GitHub |accessdate=22 May 2014}}</ref>
| released              = {{Start date|2013|08|28}} (0.10.1)<ref name="LIISStart">{{cite web |url=https://github.com/forstermatth/LIIS/releases |title=LIIS > releases |publisher=GitHub |accessdate=22 May 2014}}</ref>
| discontinued          =  
| discontinued          = Yes
| frequently updated    = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
| frequently updated    = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
| programming language  = PHP  
| programming language  = PHP  
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| website                = [http://forstermatth.github.io/LIIS/ forstermatth.github.io/LIIS]
| website                = [http://forstermatth.github.io/LIIS/ forstermatth.github.io/LIIS]
}}
}}
'''LIIS''' is an open-source [[laboratory informatics]] application "for laboratories looking to store their sample or culture metadata on a central server."<ref name="LIISPaper">{{cite journal |url=http://openresearchsoftware.metajnl.com/article/view/jors.aj/27 |journal=Journal of Open Research Software |title=LIIS: A web-based system for culture collections and sample annotation |author=Forster, Matthew S.; Paterson, Lyn; Forster, Robert J. |volume=2 |issue=1 |page=e2 |year=2014 |doi=10.5334/jors.aj |accessdate=22 May 2014}}</ref>
'''LIIS''' was an open-source [[laboratory informatics]] application "for laboratories looking to store their sample or culture metadata on a central server."<ref name="LIISPaper">{{cite journal |url=http://openresearchsoftware.metajnl.com/article/view/jors.aj/27 |journal=Journal of Open Research Software |title=LIIS: A web-based system for culture collections and sample annotation |author=Forster, Matthew S.; Paterson, Lyn; Forster, Robert J. |volume=2 |issue=1 |page=e2 |year=2014 |doi=10.5334/jors.aj |accessdate=22 May 2014}}</ref>


==Product history==
==Product history==


Students Matt Forster, David Sinclaire, Andrew Sanders, and Graham Fluet of Lethbridge College, in cooperation with Lethbridge Research Center, began a student project in 2013 to begin work on a simple tool for managing sample metadata:
Students Matt Forster, David Sinclaire, Andrew Sanders, and Graham Fluet of Lethbridge College, in cooperation with Lethbridge Research Center, began a student project in 2013 to create a simple tool for managing sample metadata:


<blockquote>''A need exists for a simple tool to curate laboratory culture collections and handle ever increasing sample metadata annotations. As existing LIMS systems are complicated and cost prohibitive, the decision was made to create a lightweight, open source solution available to laboratories involved in culture collections or sample curation.''<ref name="LIISPaper" /></blockquote>
<blockquote>''A need exists for a simple tool to curate laboratory culture collections and handle ever increasing sample metadata annotations. As existing LIMS systems are complicated and cost prohibitive, the decision was made to create a lightweight, open source solution available to laboratories involved in culture collections or sample curation.''<ref name="LIISPaper" /></blockquote>
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Eventually a code repository was started on GitHub in August 2013.<ref name="LIISFirst">{{cite web |url=https://github.com/forstermatth/LIIS/commit/b435883749d89e910c531253fb4fd5484fa0cb9d |title=LIIS > Initial commit |publisher=GitHub |accessdate=22 May 2014}}</ref> A beta release was offered August 23, followed by the first stable release five days later.<ref name="LIISStart" />
Eventually a code repository was started on GitHub in August 2013.<ref name="LIISFirst">{{cite web |url=https://github.com/forstermatth/LIIS/commit/b435883749d89e910c531253fb4fd5484fa0cb9d |title=LIIS > Initial commit |publisher=GitHub |accessdate=22 May 2014}}</ref> A beta release was offered August 23, followed by the first stable release five days later.<ref name="LIISStart" />


Forster continues to maintain the codebase as of May 2014.
At some point the GitHub repository was archived, and work was discontinued. With no updates since 2014, the project is considered abandoned.


==Features==
==Features==


Features of LIIS include<ref name="LIISStart" /><ref name="LIISPaper" />:
Features of LIIS included<ref name="LIISStart" /><ref name="LIISPaper" />:


* import and export CSV spreadsheets
* import and export CSV spreadsheets
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==Hardware/software requirements==
==Hardware/software requirements==


Unincluded dependencies are:
Unincluded dependencies were:


* Apache 2.2+ (or equivalent)
* Apache 2.2+ (or equivalent)
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<!---Place all category tags here-->
<!---Place all category tags here-->
[[Category:Laboratory informatics software (open source)]]
[[Category:Discontinued or abandoned software (open source)]]

Latest revision as of 18:59, 6 May 2021

LIIS
Developer(s) Matt Forster
Initial release August 28, 2013 (2013-08-28) (0.10.1)[1]
Discontinued

0.10.4  (September 6, 2014; 9 years ago (2014-09-06))

[±]
Preview release none [±]
Written in PHP
Operating system Cross-platform
Type Laboratory informatics software
License(s) MIT License
Website forstermatth.github.io/LIIS

LIIS was an open-source laboratory informatics application "for laboratories looking to store their sample or culture metadata on a central server."[2]

Product history

Students Matt Forster, David Sinclaire, Andrew Sanders, and Graham Fluet of Lethbridge College, in cooperation with Lethbridge Research Center, began a student project in 2013 to create a simple tool for managing sample metadata:

A need exists for a simple tool to curate laboratory culture collections and handle ever increasing sample metadata annotations. As existing LIMS systems are complicated and cost prohibitive, the decision was made to create a lightweight, open source solution available to laboratories involved in culture collections or sample curation.[2]

Eventually a code repository was started on GitHub in August 2013.[3] A beta release was offered August 23, followed by the first stable release five days later.[1]

At some point the GitHub repository was archived, and work was discontinued. With no updates since 2014, the project is considered abandoned.

Features

Features of LIIS included[1][2]:

  • import and export CSV spreadsheets
  • store general metadata designed to complement the environmental packages provided by the Genomic Standards Consortium
  • annotate and review records from multiple computer
  • private, searchable metadata library
  • web-based
  • user-based permissions
  • audit trail
  • standard field-based query

Hardware/software requirements

Unincluded dependencies were:

  • Apache 2.2+ (or equivalent)
  • PHP 5.3+
  • MySQL 5.5

Consult the installation notes for more information.

Videos, screenshots, and other media

Entities using LIIS

Further reading


External links

References

  1. ↑ 1.0 1.1 1.2 "LIIS > releases". GitHub. https://github.com/forstermatth/LIIS/releases. Retrieved 22 May 2014. 
  2. ↑ 2.0 2.1 2.2 Forster, Matthew S.; Paterson, Lyn; Forster, Robert J. (2014). "LIIS: A web-based system for culture collections and sample annotation". Journal of Open Research Software 2 (1): e2. doi:10.5334/jors.aj. http://openresearchsoftware.metajnl.com/article/view/jors.aj/27. Retrieved 22 May 2014. 
  3. ↑ "LIIS > Initial commit". GitHub. https://github.com/forstermatth/LIIS/commit/b435883749d89e910c531253fb4fd5484fa0cb9d. Retrieved 22 May 2014. 
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