ELN feature

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You can find a listing of all ELN vendors — and by extension, the features their products offer — on the ELN vendor page.

An ELN feature is one or more pieces of functionality that appear within an electronic laboratory notebook (ELN).

The ELN is an evolving concept, with new features and abilities being introduced every year. As laboratory demands change and technological progress continues, the functions of an ELN will also change. Yet like the dishwasher, the ELN tends to have a base set of functionality that defines it.

Electronic laboratory notebooks extend the functionality and efficiency of four central aspects of the researcher's activities[1]:

  • recording experimental and other types of research data
  • providing organized and searchable structure to that data
  • allowing the sharing of that data through collaborations or with internal or external individuals
  • communicating with others about that data and research

Of course, there are ELN features that are difficult to categorize under any of these activities. Such features often contribute to the entire ELN and how it's utilized. For example, multilingual support allows users to interact with the ELN in more than one language. Some functionality may also overlap several research phases, making it difficult to firmly classify.

The features described below come from an analysis of freely available ELN product information on vendor websites. An attempt was made to discover the features most utilized in vendors' ELN products and collect information on those features for each ELN. Not every possible feature is referenced here; some ELN products fill specific niches, utilizing unique functionality to solve a specific problem.

That said, keep in mind the categorization of features below is very loose. It may be viable to argue a feature belongs under a different section or multiple sections. For the purposes of organizing this information in an uncomplicated manner, however, some liberty has been taken in the categorizing of features.

Experiment, collaboration, and data management

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Chemical drawing and calculation

Chemical and/or spectrum file support

Reagents database

Task and event scheduling

Within the context of an ELN, the ability to schedule a task or event is a natural extension of how work was done in a laboratory before the advent of data management systems. Experiments are assigned to technicians, maintenance schedules are created and followed, and research deadlines must be observed. While these tasks have in the past been performed without ELN, a modern data management system can now optimize those tasks and provide additional scheduling functionality to streamline the operation of a lab. Some ELNs like Labtronics Inc.'s Nexxis ELN can schedule due dates on worksheets and experiments.[2] Additional functionality within this feature group includes the ability to configure automated assignments of experiment requests, establish recurring events, and in most cases, create printable reports.

Examples of tasks and events that can feasibly be scheduled in an ELN include:

  • production of reports
  • creation and sending of e-mails and alerts
  • maintenance of equipment
  • assignment of experiments to personnel

Option for manual result entry

While many ELN vendors tout the ability of their product to automate the entry of experiment results into the ELN database, the need for manual data entry of analysis results still exists. This feature is important to laboratories obtaining analysis results from multiple sources, including non-digital paper-based results and instruments that can't be connected to the ELN. Additional functionality associated with this feature includes a customizable spell check dictionary and the ability to add comments, notes, and narratives to most anything in the ELN.

Multiple data viewing methods

Laboratories produce data, and LIMS exist to help manage that data. Additionally, even before the existence of LIMS, scientists have had a corresponding need for visually representing data. Today a LIMS can not only collect and analyze data from samples, but it also can represent that data in reports, graphs, gradients, and spreadsheets. Depending on the LIMS, more than one way to visually represent the data may exist.

Some laboratory information management systems take a very specialized approach to data views. For example, Biomatters Ltd.'s Geneious and Geneious Pro offer multiple methods of viewing complicated sequence analysis data, including 3-D structuring and representations of plasmid vectors.[3]

Data and trend analysis

Some LIMS allow users to analyze sample data directly from the software.
Sample experimentation and analysis plays an important part of laboratory informatics, helping laboratories make better sense of their experiments and reach valuable conclusions about them. While this important phase of laboratory work has often been done externally from the LIMS, it's now more common to see basic analysis tools being included. Such tools allow raw data to be imported directly to the LIMS, which then can store, process, and report information about it. Additionally, calculations and functions used in the analysis are typically definable and editable for further flexibility.

As with the feature "multiple data viewing methods," data and trend analysis is also increasingly important in laboratories that have very specialized data management needs. When even in 2009 genetic scientists in large- and medium-sized sequencing and core centers were voicing concerns about "a lack of adequate vendor-supported software and laboratory information management systems (LIMS),"[4], today data management options like the previously mentioned Geneious Pro are starting to emerge, offering the ability to perform specialized analytical tasks for the sequencing industry.[3]

As sample experimentation and data analysis are important parts of most if not all laboratories, such functionality — which has often come in the form of a separate application or analysis device — will likely continue to merge into LIMS and other data management solutions.[5]


Data and equipment sharing

Aside from data storage and sample registration, a modern LIMS' major contribution to the laboratory is aiding in the sharing of experiment results, reports, and other data types with those who need it most. Rather than pieces of information becoming misplaced or forgotten in laboratory notebooks, the LIMS makes it easier to share sample test results and increase the efficiency of collaboration inside and outside the laboratory. Yet data is more than just sample test results; it also can come in the form of charts, reports, policy and procedure, and other documents. Additionally, the need for controlling who has access to those types of data is also an important consideration. As such, this feature is at least partially tied to other features like document management and configurable security.

Customizable fields and/or interface

As thorough as some user interface (UI) developers may be in adding relevant fields and interface options for LIMS end users, there are at times options that are either omitted or unanticipated. This has traditionally required the end user to contact the vendor and ask if the needed option(s) can be added in the next release. However, some modern LIMS vendors have responded instead by adding functionality that gives end users and/or LIMS administrators more control over the user interface.

Aspects of the LIMS' user interface that are becoming more customizable by the end user include:[6][7][8]

  • system nomenclature
  • equations used in calculations
  • data and universal fields
  • appearance of the interface and/or menus
  • primary system language
  • the LIMS source code, especially if in a non-proprietary format

Query capability

Advanced query tools allow researchers to better complete project objectives.
As was the case before the advent of databases and electronic data management solutions, today researchers must search through sample results, experiment notes, and other types of data to better draw conclusions about their research. Whereas this used to mean browsing through laboratory notebooks, Excel spreadsheets, or Access databases, now powerful query tools exists within data management tools like a LIMS. Not only can data be searched for based on name, number, or vendor, LIMSs like eBioSys' eLab and Mountain States Consulting's MSC-LIMS allow for queries of attached meta-data like user ID, project number, task number, sample type, location, and collection date.[9][10] Finally, as LIMS continue to include both sample management and experimental data management functionality, queries become more powerful in general as now sample and experiment can be matched together in one database.[5]

Query functionality often includes the ability to:

  • search both transactional data and archived data tables
  • search multiple databases via an application programming interface (API) or open database connectivity (ODBC) connection
  • filter and sort data
  • create ad-hoc queries

Import data

Data can originate from numerous places in the laboratory. The ability to import that data into a LIMS can be beneficial, especially when an instrument can't be connected or an external client provides a data feed independent of the LIMS. Some LIMS like Bridge-Soft's QMS even allow to cross-reference laboratory nomenclature from received data sources with the recipient's.[11] And of course instrument interfacing allows for even more importation options. Additional data validation procedures may be applied to the imported data to guarantee information homogeneity. Additionally, some LIMS may allow for the import and integration of non-normalized legacy data tables with LIMS data tables into a single database.

Internal file or data linking

This feature allows LIMS users to link together reports, protocols, sample results, and more, providing greater contextual clarity to projects. Examples include:

  • linking a sample batch to a test or sample preparation methodology
  • linking a test process to a particular customer
  • linking a report to a sample batch
  • linking a group of test results to a raw data file
  • linking an image to a work order
  • linking all lab results with the correct reporting test method

External file or data linking

This feature allows LIMS users to link together data and files in the LIMS with data, files, and customers outside the scope of the LIMS. Examples include:

  • linking data files from chromatography equipment to synthesis data[12]
  • linking equipment ID with an external annotation database[13]
  • linking external standard operating procedure documents with an internal test specification[14]

ELN support or integration

As a software replacement for more traditional paper laboratory notebooks, the electronic laboratory notebook (ELN) has been important to laboratory functions. Yet the lines between ELN and LIMS began to blur in the 2000s, with both types of software incorporating features from the other.[15][16] The result today is some LIMS either include traditional ELN functionality or link physical laboratory notebook references to data in the LIMS.[17]

Export to MS Excel

While Microsoft Excel has long been used within the laboratory setting, a slow shift towards relational databases and LIMS occurred in the late 1990s and early 2000s.[18] Additional concerns with the difficulties of Excel's validation and compliance with FDA 21 CFR Part 11 and other regulations have led many labs to turn to data management solutions that are easier to validate.[19] Nevertheless, laboratories continue to use Excel in some fashion, and thus Excel integration or data exportation in Excel format is a real need for LIMS customers. LIMS with this feature allow raw, processed, or imported data to be exported in the Excel format for further analysis and dissemination.

Raw data management

While not described as a feature on most LIMS vendor websites, a few indicate that their LIMS is capable of managing (import, export, editing, etc.) data in its raw format for future analysis.

Data warehouse

A LIMS' data warehouse serves the important function of storing, extracting, and managing the data that laboratories crank out for the purposes or analysis, reporting, and process management, typically separate from the primary storage database. Data warehouses also offer the benefit of speeding up queries, making queries and data mining more user-friendly, and smoothing out data gaps.[20]

Deadline control

Deadline control is functionality within a LIMS that allows users to manage and be notified of events that occur within the laboratory. With this functionality users can also be notified of upcoming deadlines on anything from sample analysis to license renewal.

Note that this functionality may also feasibly fall under the task and event scheduling or alarms features. As deadline control seems to be advertised as a notable feature by only a few vendors, it seems even more likely that this functionality is considered part of scheduling or alarms.

Production control

There are many types of businesses that produce goods, and in most cases there is a research laboratory involved at some point in the process. This is especially true in the pharmaceutical and chemical industries, where production measurements such as yield, volume, activity, and impurity are vital. As LIMSs have already recorded such information during tests and analysis, the addition of production control functionality seems natural. Some LIMS take a very active approach to this. For example, 2nd Sight Solutions' OhNo! features production control as major functionality for the synthesis of radiopharmaceuticals.[21] Other LIMS may have less pronounced production functionality, while still offering the ability to track the production process in and out of the lab. And yet other LIMSs like dialog's diaLIMS offer robust production-based functionality but as a module or add-on to the base LIMS software.[22]

The types of functionality that may fall under this feature include:

  • recipe management
  • consumable tracking
  • batch traceability
  • production planning
  • enterprise resource planning

Project and/or task management

Project and task management within a LIMS typically involves the scheduling of tasks to workers and organizing associated tasks into a more cohesive unit for better tracking and management. While the functionality of task and event scheduling can also be found in project and task management, many LIMS include functionality beyond scheduling that warrants the addition of the project and/or task management feature. This functionality includes:

  • job allocation and rescheduling
  • instrument workload tracking
  • time tracking
  • pending workload verification
  • priority setting
  • project-based workflow management
  • sample, batch, and document linking
  • work list sharing
  • recurring event management

Inventory management

LIMS can help laboratories keep track of their stock of reagents and even streamline reordering of them.
Laboratories use a wide array of inventory, from reagents to glassware, from radiopharmaceuticals to laboratory baths. With that comes the need to know how much/many and the frequency of use. For this, most LIMS products now include some sort of inventory management functionality.
  • register origin, demographics of incoming materials
  • track used and in-use items via barcodes
  • track inventory reduction based on usage and shipping out of the lab
  • create alerts for when items reach a certain stock level
  • calculate inventory cost and fluctuation
  • manage transportation and routing
  • manual incrementing/decrementing of items
  • track location and usage of laboratory equipment
  • assign storage locations
  • track forensic evidence

It should be noted that samples and electronic equipment may also be considered inventory, and thus there is likely some functionality crossover with the sample management and instrument management features.

Document creation and management

Standard operation procedures, (SOPs), specifications, reports, graphs, images, and receipts are all collected and used in the average laboratory. With a LIMS already designed to manage and store sample and experiment data, it makes sense to include functionality to create, import, export, and manage other sorts of data files. As sample and experimental data can be indexed, queried, and linked, so too can document data. Functionality of a typical document management system includes the ability to:

  • upload and index documents
  • enforce version control
  • provide full text search
  • export to PDF or other relevant format
  • add documents as attachments

Case management

The laboratory information system (LIS) has played an important role in the case management tasks of patient-centric and clinical laboratories. However, some LIMS have gained case management functionality, effectively blurring the lines between LIS and LIMS.[23]. Self-proclaimed LIMS products have emerged in the clinical, public health, and veterinary industries, areas that have historically been served by LIS software. When also considering the fields of law enforcement and forensic science, case management has an increasingly important role in some LIMS. Functionality seen in the case management feature includes:

  • case accessioning and assignment
  • disease tracking
  • trend analysis
  • clinical history follow-up
  • out-of-range result alerts
  • document and result association
  • evidence control
  • study management

Workflow management

Capturing workflow in the lab is becoming more commonplace for the LIMS.
Workflow management is common in the laboratory, acting as a graphical representation of planned sequential steps to either fully or partially automate a process within the lab. Separate standards-based workflow management systems (in the form of a software component) have traditionally performed this task.[24] However, in the 2000s LIMS vendors began incorporating workflow management functionality into their LIMS software, reducing the headaches that customization of a LIMS often brought.[25]


Modern commercial and open-source LIMS solutions often feature workflow management functionality, including[26][27][25]:

  • attribute definition of activities
  • definition of inputs and outputs of activities
  • assignment of documentation to activities
  • setting of quality control limits
  • dynamically modify workflow in case of future changes
  • receive notification of changes to the workflow
  • sending user-defined messages during the process


Specification management

Specification (spec) management is vital to not only the manufacturing and research industries but also to a host of other laboratories requiring precise measurements and infallible test methods. Just as the ASTM offers standards and specs for LIMS[28], so too do LIMS users have standards and specs for their laboratory. With spec management in place within the LIMS, laboratories can then:

  • enforce standard operating procedures and business rules
  • create specs down to a project or sample level
  • validate recipes and procedures
  • accept or reject sample batches
  • document internal and external spec history

Note that some of the functionality of spec management may cross over into the realm of quality control and data validation.

Customer and supplier management

Unless a laboratory is conducting internalized independent research, in most cases it will do business with external entities such as contract labs, sample providers, equipment providers, and reagent suppliers. In some cases, even internal employees may be considered a customer, necessitating documentation of who is using the system and in what ways. For a veterinary lab, the customer may be the animal and handler. For a forensic lab the customer may be more complex: internal staff, university staff, police departments, and maintainers of nationwide crime databases may all at some point act as customers. In these cases, documenting these various points of contact and linking them to samples, equipment, and tests becomes vital. Managing demographics, complaints, correspondence, and history are all feasible with customer management functionality. This process is often made simpler through the use of a more context-neutral entity creation system, which allows for more flexible management of contacts.

This feature may also be referred to as contact management, an address book module, or a customer service module.

Billing management

While the finances of a laboratory are important, they've typically been handled separately as a business process. However, some LIMS include additional functionality to make handling financial transactions and documentation of all sorts possible within the LIMS. In theory, such functionality brings the possibility of keeping more of a laboratory's data centrally located and queryable. This feature may include:

  • payment processing
  • expense reporting
  • price quotes
  • revenue management
  • workload tracking of billable hours
  • bill of materials
  • grant management

 

Quality, security, and compliance

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Regulatory compliance

The topic of whether or not a LIMS meets regulatory compliance is often a complex one. While Title 21 CFR Part 11 has arguably had the largest influence on a electronic data management system's compliance, other influential standards have shaped the way LIMS and other systems handle and store data. Other compliance-based codes, standards, and regulations include:

With so many codes, standards, and regulations, LIMS consumers are advised to contact vendors with their user requirements and ask how the vendor's software meets and/or exceeds those requirements.

QA/QC functions

The quality management functions of a LIMS allow users to maintain a level of necessary quality across many of the functions in a laboratory. From running quality assurance tests to ensuring employed researchers are proficient at certain tasks, the QA/QC functionality of a LIMS is largely responsible for the output of consistent data and manufactured products in and out of the lab.

Common functionality includes[29][30]:

  • single or batch QA/QC tests
  • quality control charts and reports
  • proficiency testing
  • document management
  • instrument maintenance
  • data acceptance/rejection
  • certificates of analysis (COA)
  • data types defined by QC analysis

Performance evaluation

As document management becomes increasingly prevalent in LIMS, it only makes sense to also collate and store all the documentation associated with employee training and certification. Changes to laboratory techniques, scientific understanding, and business practices force researchers to learn, reevaluate, and demonstrate competency in order to maintain quality levels in the laboratory. Evaluations can frequently extend beyond staff members, however. Clinics, visit types, vendors, or test species can also be tracked and evaluated based on custom criteria. The performance evaluation functionality of a LIMS makes this possible.

That functionality typically includes the ability to maintain training records and history, and also to link that training to a technique or piece of equipment. Afterwards, the staff member, vendor, etc. can be marked as competent or certified in the equipment, knowledge, or process. Periodical assessment of the training and its practical effectiveness can later be performed. Productivity of an entity or process can also be gauged over a certain date range based on tracked time, pre-determined milestones, or some other criteria.

Audit trail

Whether validating sample data or an entire LIMS, maintaining an audit trail is an important part of 21 CFR Part 11 compliance.
As codes and regulations like Title 21 CFR Part 11 mandate "computer systems (including hardware and software), controls, and attendant documentation" utilize electronic signatures and audit trails[31], LIMS developers must put serious thought into how their software handles audit trail functionality. The audit trail — documentation of the sequence of activities that have affected an action — must be thorough and seamlessly integrated into the software.

Information recorded in the audit trail typically includes:

  • operator code
  • time stamp
  • location
  • case number
  • transaction type
  • amount and quantity prior to change
  • user notes


Chain of custody

The chain of custody (COC) of an item is of varying importance, depending on the type of laboratory. A highly regulated laboratory that works under Code of Federal Regulation or other guidelines makes tracking COC a vital part of its operations. This is especially true in forensic labs, which depend on continuous accountability of their evidence collection, retention, and disposal procedures.[32] As with an audit trail, a laboratory depends on recorded information like user ID, time stamp, and location ID to maintain a robust and accurate COC. Barcodes, inventory management, and configurable security roles all play an important part in maintaining chain of custody.

Configurable roles and security

Many roles exist within the laboratory setting, each with its own set of responsibilities. And just as the role an individual plays within the laboratory may change, so may the responsibilities associated with each role. This sort of change necessitates a flexible and configurable security system, one that allows for the placement of individual LIMS users into standardized security roles which provide role-specific access to certain LIMS functionality. Additionally, as responsibilities change within roles, that same flexible configuration is necessary for assigning or restricting access to certain LIMS functionality for each existing or newly created role.

Of course, roles aren't always assigned on an individual level. Often large groups of individuals may need to be assigned to roles, necessitating group assignments for security purposes. For example, a group of laboratory trainees may only be given read-only access to the sample login and sample tracking functionality of the system through a custom "Trainees" group role, while the head researcher of the lab may be given the "Administrator" role, which allows that individual to access most if not all of the LIMS' functionality.

Data normalization

For the purposes of describing LIMS functionality, "data normalization" specifically refers to the process of ensuring incoming/imported data into the LIMS is standardized to the same format of existing LIMS data.

Here's an example to better explain this issue. When a LIMS is initially configured, in most if not all cases a clear standard can be set for how logged samples and their associated measurements pre- and post-analysis are recorded in the system. Perhaps all temperatures will be recorded in Celsius to two decimal places. If temperature data imported from a spreadsheet or a lab instrument is not in this format, the LIMS can normalize the incoming data to match the standard already set for existing LIMS temperature data. This ensures consistency within the LIMS database and typically leads to better data validation efforts later on.

Note: Some LIMS developers may include data normalization functionality within what they may refer to as data validation functionality. The line between these two may be blurred or not exist at all.

Data validation

For the purposes of describing LIMS functionality, "data validation" specifically refers to the process of ensuring existing data in the LIMS — either pre-analysis or post-analysis — sufficiently meets any number of standards or thresholds set for sample login, sample analysis, or any other data management process in the LIMS. This validation process may be completely automatic and system-based, or it may also include additional steps on the part of the user base utilizing additional LIMS functionality, including verification of standard operating procedures (SOPs), QC samples, and QA approval.[33][34]

Note: This functionality shouldn't be confused with the process of validating the LIMS itself, which is an entirely different process partially falling under regulatory compliance and involves the process of ensuring "the software is performing in a manner for which it was designed."[35]

Data encryption

The existence of this functionality in LIMS software generally indicates the LIMS has the ability to protect the integrity and authenticity of its housed data through the use of a variety of technologies which makes data unreadable except to those possessing a key/right/etc. to unlock/read the data. This functionality is especially vital to the Web-enabled LIMS, which transfers information over the Internet in a client-server relationship. As a wide variety of encryption technologies exist, it's generally a good idea to consult with the developers of a LIMS to determine the strengths and weaknesses of their employed encryption methods.

Version control

Version control is a form of safeguard which helps preserve data integrity. This is typically done by creating a modifiable new version of a piece of information rather than allowing the original to be modified. Such versioning may be applied to a wide variety of digital information housed in the LIMS, including test methods, training certifications, instrument logs, specifications, and process and procedure (P&P) documentation. In LIMS like LabWare LIMS, reference data can also be versioned while also retaining the original relationship between samples and test results, including the version of reference data current at the time lab testing is performed.[36] Information tracked with such revisions includes attributes like user name, time the edit was made, and what exactly was edited. This also benefits those managing audit trails and chains of custody.

The temperature of an open cryopreservation container may be monitored on a computer via a connection to a LIMS with environmental monitoring functionality.
Other LIMS may employ a different form of version control called file locking, which simply puts the affected information into a read-only mode for users while someone else is busy editing it. Another popular strategy is to, rather than locking the file, allow multiple people edit to a piece of information, later merging the various edits. Potential LIMS buyers may need to inquire with developers to determine what type of versioning scheme is used in the vendor's software.

Automatic data backup

The existence of this piece of functionality in a LIMS usually means information contained in one or more associated databases or data warehouses can be automatically preserved in an additional backup file. The save location for that file as well as the scheduled backup time is configurable, typically through the administrative module of the LIMS.

Environmental monitoring

Some LIMS like Core LIMS and Oracle Health Sciences LabPas allow users to monitor the environmental conditions of not only sample storage containers but also the entire laboratory itself.[37][38] Attributes like humidity, air quality, and temperature may be monitored to ensure sample storage units and experiments maintain desired conditions. Alarms may be able to be configured to notify staff if a storage container's environmental attributes go beyond a certain threshold. Manufacturers utilizing a LIMS like NOVA-LIMS may also be able to employ more advanced environmental tracking features in the plant to guarantee a more consistent, higher quality product is created.[39]

 

Reporting, barcoding, and printing

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Custom reporting

Reporting is a vital part of a LIMS, as it allows users to gain a clearer picture of collected data and potential trends. At a minimum a number of pre-configured report styles come standard with a LIMS. However, some LIMS are more flexible than others, offering the ability to customize reports in numerous ways. The most popular attributes of custom reporting include custom headers, custom information placement, charts, pivot tables, and multiple output formats.

Note: Some LIMS vendors will offer custom reporting as an option as an added cost, depending on the level of customization required.

Report printing

Today's LIMS software almost universally offers the ability to print reports and other materials, so this feature may seem a bit redundant to list. Nonetheless, printer support is a feature worth confirming when considering a piece of LIMS software.

Label support

The label — typically affixed to a sample container — is a vital part of the sample tracking process.[40] Identifying information such as sample number, batch number, and barcodes are printed on such labels to ensure optimized sample management and more precise sample data. As such, some LIMS allow users to design and print labels directly from the software.

The word "Wikipedia" encoded in Code 128 and Code 39

Barcode support

Barcodes offer many advantages to laboratory techs handling samples, including more accurate data input, tighter sample/instrument associations, tighter sample/study associations, and more room for human-readable information on a label.[40] Given such advantages, many LIMS developers have integrated barcode support into their laboratory information management systems, including support for symbologies like Code 128, Code 39, and Interleaved 2 of 5. Aside from printing options, a LIMS may also offer support for a variety of bar code readers.

Barcode support and label support are typically found together in LIMS software, but not always, thus their separation into two features of a LIMS.

Export to PDF

A LIMS with this feature is able to collect and save information into a Portable Document Format (PDF).

Export to MS Word

A LIMS with this feature is able to collect and save information into a Microsoft Office Word format.

Export to HTML or XML

A LIMS with this feature is able to collect and save information into a HyperText Markup Language (HTML) and/or Extensible Markup Language (XML) format.

Fax integration

A LIMS with this feature is able to connect with a fax machine and send information to it via manual input, automatically, and/or at scheduled intervals.

Email integration

A LIMS with this feature is able to integrate with and use the electronic mail information exchange method to send reports, alerts, and more via manual input, automatically, and/or at scheduled intervals.

 

Base functionality

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Administrator management

The administrator management tools of a LIMS allow lab technicians to set up the LIMS most optimally for the laboratory. Through the administrator management interface of a LIMS, other features may be accessed like setting up user roles and scheduling automatic data backups.

Like report printing, administrator management is nearly ubiquitous in LIMS software, generally considered a mandatory feature. However, for the purposes of being thorough, it's important to point out its existence.

Modular

This feature indicates that a LIMS has an intentional modular design, which separates some functionality into manageable components of the overall system. Generally speaking, a modular design allows for 1. the structured addition of new functionality to a LIMS and 2. the limiting of overall effects on the system design as new functionality is added.

Instrument interfacing and management

An entire room of gas chromatography instruments could potentially be connected to a LIMS via instrument interfacing.
In laboratories there are instruments, and with those instruments comes scientific measurements which produce data. It's therefor natural a lab technician would want to connect those instruments to a laboratory information management system, which is already organizing and storing laboratory data. This sort of interfacing is typically handled with instrument-to-LIMS interfaces, which started out as merely data-transfer mechanisms. Later that interface mechanism became much more robust as a data management tool, though often at great expense with heavy involvement from third parties.[41] Today, "many LIMS vendors can act as single source providers of the entire instrument interfacing solution,"[42], providing a cheaper and smoother solution to LIMS customers.

Mobile device integration

While not incredibly common, a few LIMS developers are including support for mobile devices in their laboratory information management system. LabCollector, for example, extends its LIMS' functionality to Pocket PC or Windows CE devices equipped with wireless barcode scanners, allowing users to read or collect sample information while on the move.[43] Future Technologies' DNA LIMS, designed for labs performing DNA analysis, has its own mobile version for technicians who need access but can't be in the lab.[44]

Alarms and/or alerts

Alarms and alerts are an integral part of a LIMS. They can be automatic or scheduled, and they can come in the form of an e-mail, a pop-up message, or a mobile text message. When the results for a sample analysis go out out of range, an automatic warning message can appear on the screen of the technician responsible for the analysis. A scheduled alert can be e-mailed to a lab technician every month indicating a piece of laboratory equipment needs routine maintenance. If the LIMS is equipped with environmental monitoring, an alert can be sent in the form of an SMS text message to the head researcher if the temperature inside a freezer unexpectedly rises. All of these scenarios represent a tiny fraction of the possible implementation of alarms and alerts in a LIMS, highlighting how powerful (yet easy to take for granted) this feature is.

Work-related time tracking

This feature specifically refers to a LIMS' ability to track the amount of time an employee spends at work in general (for payroll purposes) or on more specific projects and tasks (as part of an employee work evaluation program).

Voice recognition system

A LIMS with this feature allows some functions of the LIMS (for example, accessing sample analysis results) to be accessed via voice commands.

External monitoring

This feature allows clients outside the laboratory to monitor the status of sample batches, test results, and more via an online Web portal or, less commonly, as activity alerts sent via e-mail, fax, or SMS.

Messaging

Instant messaging clients built into a LIMS often make it easier to collaborate.
The messaging feature of a LIMS may refer to one (or both) of two things:
  • a built-in instant messaging system that allows users to converse with each other through text messages real-time
  • an SMS text messaging integration that allows the users or the LIMS itself to send messages or alerts to a user's mobile or smart phone

Multilingual

If a LIMS is listed as multilingual, its an indication the LIMS interface can be configured to display more than one language depending on the preference a user or administrator chooses. Some LIMS interfaces can only be displayed in one of two languages (English or German, for example), while others come configured with support for dozens of languages.

Network-capable

This feature is perhaps archaic and/or obvious, but it is mentioned nonetheless. It's generally applied to a non-Web-based LIMS installed over a local or wide-area computer network, essentially indicating the LIMS is not an isolated application, but rather one that can interface with other instances of the LIMS or other networked instruments.

Web client or portal

A LIMS with a Web client or portal is either a Web-based LIMS (one that is not installed on every computer, but rather is hosted on a server and accessed via a Web browser) or a non-Web-based LIMS with an included portal to access it via the Internet.

Online or integrated help

This indicates a LIMS has help infrastructure integrated into the software, support documentation via the LIMS vendor's website, or both.

Software as a service delivery model

This indicates the software can be licensed and utilized via the software as a service (SaaS) delivery model.

Usage-based cost

While rare, some LIMS vendors allow potential clients to license and utilize the vendor's software under a usage-based cost model. An example of this model in use is Bytewize AB's O3 LimsXpress, which has a cost directly related to the amount of samples processed each month.[45]

 

References

  1. ↑ Macneil, Rory (6 October 2010). "What are electronic lab notebooks for?". Axiope. http://elnblog.axiope.com/?p=451. Retrieved 04 May 2011. 
  2. ↑ "Nexxis Electronic Laboratory Notebook" (PDF). PerkinElmer, Inc. 2011. http://www.cambridgesoft.com/literature/PDF/Nexxis%20ELN.pdf. Retrieved 07 February 2013. 
  3. ↑ 3.0 3.1
  4. ↑ Richter, Brent G.; David P. Sexton (2009). "Managing and Analyzing Next-Generation Sequence Data". PLoS Computational Biology 5 (6). doi:10.1371/journal.pcbi.1000369. http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000369. 
  5. ↑ 5.0 5.1 Cite error: Invalid <ref> tag; no text was provided for refs named AE0302
  6. ↑
  7. ↑
  8. ↑
  9. ↑
  10. ↑
  11. ↑
  12. ↑
  13. ↑
  14. ↑
  15. ↑ Elliot, Michael H. (December 2006–January 2007). "The state of the ELN Market". Scientific Computing World. http://www.scientific-computing.com/features/feature.php?feature_id=50. Retrieved 04 May 2011. 
  16. ↑ Elliot, Michael H. (October 2011). "Informatics Convergence Presents Opportunities and Challenges". Scientific Computing. http://www.scientificcomputing.com/articles-IN-Informatics-Convergence-Presents-Opportunities-and-Challenges-111111.aspx. Retrieved 25 February 2012. 
  17. ↑
  18. ↑ Williams, Robert W. (2003). "Managing Your Lab Data Flux: Getting Beyond Excel" (PDF). The Bioinformatics of Brains: From Genes and Proteins to Behaviors. Washington, DC: Society for Neuroscience. http://www.sfn.org/skins/main/pdf/ShortCourses/2003/sc1_9.pdf. Retrieved 17 February 2012. 
  19. ↑ Howard, David A.; David Harrison (2007). "A Pragmatic Approach to the Validation of Excel Spreadsheets – Overview" (PDF). Pharma IT 1 (2): 30–35. http://www.spreadsheetvalidation.com/pdf/Excel_Spreadsheet_Validation_Overview.pdf. 
  20. ↑ Vannest, Jeff (11 February 2011). "Advantages of a Data Warehouse". LABVANTAGE Solutions, Inc.. http://www.labvantage.com/blog/?p=79. Retrieved 17 February 2012. 
  21. ↑
  22. ↑
  23. ↑ Hice, Randy (1 July 2009). "Swimming in the Clinical Pool: Why LIMS are supplanting old-school clinical LIS applications". STARLIMS' Laboratory Informatics Blog. http://blog.starlims.com/2009/07/01/swimming-in-the-clinical-pool-why-lims-are-supplanting-old-school-clinical-lis-applications/. Retrieved 09 May 2011. 
  24. ↑ "Workflow Management Coalition Terminology & Glossary" (PDF). Workflow Management Coalition. February 1999. pp. 9. http://www.wfmc.org/standards/docs/TC-1011_term_glossary_v3.pdf. Retrieved 20 February 2012. 
  25. ↑ 25.0 25.1 Maxwell, Glen (1 November 2003). "Using Workflows in LIMS to Reduce Customization". Scientific Computing and Instrumentation. http://www.scientificcomputing.com/using-workflows-in-lims-to-reduce.aspx. Retrieved 20 February 2012. 
  26. ↑ Melo, Alexandre; Alessandra Faria-Campos; Daiane M DeLaat; Rodrigo Keller; Vinícius Abreu; Sérgio Campos (2010). "SIGLa: an adaptable LIMS for multiple laboratories". BMC Genomics 11 (Suppl 5): S8. doi:10.1186/1471-2164-11-S5-S8. http://www.biomedcentral.com/1471-2164/11/S5/S8. 
  27. ↑ "My laboratory has unique processes, Can X-LIMS work for me?". EthoSoft, Inc.. http://www.ethosoft.com/LIMS/XLIMSProductInfo/XLIMSFAQ/tabid/69/Default.aspx. Retrieved 20 February 2012. 
  28. ↑ "ASTM E1578 - 06 Standard Guide for Laboratory Information Management Systems (LIMS)". ASTM International. http://www.astm.org/Standards/E1578.htm. Retrieved 22 February 2012. 
  29. ↑ Paszko, Christine; Carol Pugsley (2000). "Considerations in selecting a laboratory information management system (LIMS)". American Laboratory 32 (18): 38–42. doi:10.1016/0169-7439(94)90006-X. http://www.mendeley.com/research/considerations-selecting-laboratory-information-management-system-lims/. 
  30. ↑ Hull, Carl; Bruce Wray; Ford Winslow; Mark Vilicich (2011). "Tracking and Controlling Everything that Affects Quality is the Key to a Quality Management System" (PDF). Combinatorial Chemistry & High Throughput Screening 14 (9): 772–780. doi:10.2174/138620711796957125. http://www.uniconnect.com/wp-content/uploads/2011/11/CCHTS-LIMS-Article.pdf. 
  31. ↑ "Electronic Code of Federal Regulations - Title 21: Food and Drugs - Part 11: Electronic Records; Electronic Signatures". U.S. Government Printing Office. http://ecfr.gpoaccess.gov/cgi/t/text/text-idx?c=ecfr&sid=5ff3a0efed913ef8fae9e225869688a2&rgn=div5&view=text&node=21:1.0.1.1.7&idno=21. Retrieved 02 March 2012. 
  32. ↑ Jones, Andrew; Craig Valli (2008). "Chapter 1: An Introduction to Digital Forensics". Building a Digital Forensic Laboratory: Establishing and Managing a Successful Facility. Butterworth-Heinemann. pp. 11. ISBN 1856175103. http://books.google.com/books?id=F5IU7XXKwCQC. 
  33. ↑ "Quality Assurance - Data Management". Stable Isotope Ratio Facility for Environmental Research (SIRFER) at the University of Utah. http://sirfer.utah.edu/qaqc.pdf. Retrieved 07 May 2012. 
  34. ↑ Hitchcock, Noel (2005). "Chapter 10: Efficient utilization of LIMS data and integration with mining process management systems". In Dessureault, Sean D.; Rajive Ganguli; Vladislav Kecojevic; Jami Girard Dwyer. Application of Computers and Operations Research in the Mineral Industry. Taylor & Francis. pp. 85–88. doi:10.1201/9781439833407.ch10. ISBN 9780415374491. http://www.crcnetbase.com/doi/abs/10.1201/9781439833407.ch10. 
  35. ↑ Turner, Elizabeth; Jojean Bolton (2001). "Required steps for the validation of a Laboratory Information Management System". Quality Assurance 9 (3–4): 217–224. PMID 12553085. http://www.ncbi.nlm.nih.gov/pubmed/12553085. 
  36. ↑ "LabWare - Table Explorer". LabWare, Inc.. http://www.labware.com/LWWeb.nsf/lp/en041001. Retrieved 07 May 2012. 
  37. ↑ "Core LIMS Features & Components". Core Informatics, LLC. http://www.corelims.com/features.htm. Retrieved 07 May 2012. 
  38. ↑ "Oracle Health Sciences LabPas" (PDF). Oracle Corporation. 2011. http://www.oracle.com/us/industries/life-sciences/health-sciences-labpas-ds-396097.pdf. Retrieved 07 May 2012. 
  39. ↑ "Environmental Monitoring Program". Novatek International. http://ntint.com/prod-envmon.shtml. Retrieved 07 May 2012. 
  40. ↑ 40.0 40.1 Gilles, Clarence (1 July 2008). "Bar Code and Sample Tracking: It All Starts with the Label". Scientific Computing. http://www.scientificcomputing.com/bar-code-and-sample-tracking.aspx. Retrieved 8 May 2012. 
  41. ↑ Pavlis, Robert (May/June 2004). "Trends in instrument-to-LIMS interfacing". Scientific Computing World. http://www.scientific-computing.com/features/feature.php?feature_id=88. Retrieved 8 May 2012. 
  42. ↑ DeHeer, Larry (1 October 2009). "Instrument Interfacing - The Great Paradox of LIMS?". LIMSfinder.com. http://www.limsfinder.com/BlogDetail.aspx?id=33851_0_2_0_C. Retrieved 8 May 2012. 
  43. ↑ "LabCollector - Features in detail". AgileBio. http://labcollector.com/index.php/labcollector-on-pdahtml. Retrieved 8 May 2012. 
  44. ↑ "Biometrics and DNA Laboratory Information Management and Analysis System Development". Future Technologies, Inc.. http://www.ftechi.com/dna_biometric.shtml. Retrieved 8 May 2012. 
  45. ↑ "Modern web based Lims from 10 Euro cent/sample". Bytewize AB. http://www.bytewize.com/o3lims-xpress/prices/?lang=en. Retrieved 8 May 2012. 
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