Difference between revisions of "File:Fig1 Schulz JofPathInformatics2016 7.jpg"
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==Summary== | |||
{{Information | |||
|Description='''Figure 1.''' Serial workflow and architecture to download Cancer Genomics Hub data. To obtain next generation sequencing data from Cancer Genomics Hub, the cgDownload utility was used to transfer aligned whole genome and whole exome sequencing data. The SomaticSniper utility was then used to identify somatic variants and tumor clonality was predicted with SciClone. These utilities were all manually configured on a server running CentOS 6.7 | |||
|Source={{cite journal |journal=Journal of Pathology Informatics |title=Use of application containers and workflows for genomic data analysis |author=Schulz, W.L.; Durant, T.; siddon, A.J.; Torres, R. |volume=7 |pages=53 |year=2016 |doi=10.4103/2153-3539.197197}} | |||
|Author=Schulz, W.L.; Durant, T.; siddon, A.J.; Torres, R. | |||
|Date=2016 | |||
|Permission=[http://creativecommons.org/licenses/by-nc-sa/3.0/ Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported] | |||
}} | |||
== Licensing == | == Licensing == | ||
{{cc-by-nc-sa-3.0}} | {{cc-by-nc-sa-3.0}} | ||
Latest revision as of 00:27, 17 January 2017
Summary
| Description |
Figure 1. Serial workflow and architecture to download Cancer Genomics Hub data. To obtain next generation sequencing data from Cancer Genomics Hub, the cgDownload utility was used to transfer aligned whole genome and whole exome sequencing data. The SomaticSniper utility was then used to identify somatic variants and tumor clonality was predicted with SciClone. These utilities were all manually configured on a server running CentOS 6.7 |
|---|---|
| Source |
Schulz, W.L.; Durant, T.; siddon, A.J.; Torres, R. (2016). "Use of application containers and workflows for genomic data analysis". Journal of Pathology Informatics 7: 53. doi:10.4103/2153-3539.197197. |
| Date |
2016 |
| Author |
Schulz, W.L.; Durant, T.; siddon, A.J.; Torres, R. |
| Permission (Reusing this file) |
Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported |
| Other versions |
Licensing
  |
This work is licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. |
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