Difference between revisions of "MISO"

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| developer              = The Genome Analysis Centre
| developer              = Ontario Institute for Cancer Research
| released              = {{Start date|2012|05|31}} (0.1.6)<ref name="MISOStart">{{cite web |url=https://web.archive.org/web/20160429075804/http://www.tgac.ac.uk/misofiles/MISO-01.6.RC-User_Manual.pdf |format=pdf |title=MISO 0.1.6RC User Manual |publisher=The Genome Analysis Centre |date=2012 |pages=2–3 |accessdate=30 September 2012}}</ref>
| released              = {{Start date|2012|05|31}} (0.1.6)<ref name="MISOStart">{{cite web |url=https://web.archive.org/web/20160429075804/http://www.tgac.ac.uk/misofiles/MISO-01.6.RC-User_Manual.pdf |format=pdf |title=MISO 0.1.6RC User Manual |publisher=The Genome Analysis Centre |date=2012 |pages=2–3 |accessdate=30 September 2012}}</ref>
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==Media and news==
==Media==


* July 2012: ISMB 2012 presentation<ref name="ismb2012_presentation">{{cite web|url=https://f1000research.com/slides/1092117|title=MISO: An open-source LIMS for next-generation sequencing centres|author=Robert Davey|accessdate=7 May 2019}}</ref> and poster<ref name="ismb2012_poster">{{cite web |url=https://f1000research.com/posters/1092116 |format=PDF |title=MISO: an open-source LIMS for small-to-large sequencing centres |author=Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario |publisher=Faculty of 1000 Ltd |date=2012 |accessdate=30 September 2012}}</ref>. MISO: An open-source LIMS for next-generation sequencing centres.
* July 2012: ISMB 2012 presentation<ref name="ismb2012_presentation">{{cite web|url=https://f1000research.com/slides/1092117|title=MISO: An open-source LIMS for next-generation sequencing centres|author=Robert Davey|accessdate=7 May 2019}}</ref> and poster<ref name="ismb2012_poster">{{cite web |url=https://f1000research.com/posters/1092116 |format=PDF |title=MISO: an open-source LIMS for small-to-large sequencing centres |author=Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario |publisher=Faculty of 1000 Ltd |date=2012 |accessdate=30 September 2012}}</ref>. MISO: An open-source LIMS for next-generation sequencing centres.
* July 2016 : BOSC 2016 presentation<ref name="bosc2016_vid">{{cite url|url=https://www.youtube.com/watch?v=znrRsPip5D0|title=MISO LIMS: HTS Management by Earlham Institute and Ontario Institute for Cancer Research|author=Masella, Andre; Taschuk, Morgan; Armstrong, Heather; Cooke, Dillan; Debat, Tony; Davey, Robert; Salt, Chris|date=2016 |publisher=YouTube|accessdate=7 May 2019}}</ref><ref name="bosc2016_slides">{{cite web|url=https://f1000research.com/slides/5-1608|title=Enhancements to MISO: an open-source community-driven LIMS|publisher=F1000Research|author=Masella, Andre; Taschuk, Morgan; Armstrong, Heather; Cooke, Dillan; Debat, Tony; Davey, Robert; Salt, Chris}}</ref> Enhancements to MISO: an open-source community-driven LIMS
* July 2016 : BOSC 2016 presentation<ref name="bosc2016_vid">{{cite web |url=https://www.youtube.com/watch?v=znrRsPip5D0|title=MISO LIMS: HTS Management by Earlham Institute and Ontario Institute for Cancer Research|author=Masella, Andre; Taschuk, Morgan; Armstrong, Heather; Cooke, Dillan; Debat, Tony; Davey, Robert; Salt, Chris|date=2016 |publisher=YouTube|accessdate=7 May 2019}}</ref><ref name="bosc2016_slides">{{cite web |url=https://f1000research.com/slides/5-1608|title=Enhancements to MISO: an open-source community-driven LIMS|publisher=F1000Research|author=Masella, Andre; Taschuk, Morgan; Armstrong, Heather; Cooke, Dillan; Debat, Tony; Davey, Robert; Salt, Chris}}</ref> Enhancements to MISO: an open-source community-driven LIMS


==External links==
==External links==

Revision as of 21:39, 7 May 2019

MISO
Developer(s) Ontario Institute for Cancer Research
Initial release May 31, 2012 (2012-05-31) (0.1.6)[1]
Stable release

2.18.0  (June 7, 2024; 5 months ago (2024-06-07))

[±]
Preview release none [±]
Written in Java
Operating system platform-independent
Type Laboratory informatics software
License(s) GNU Public License v3.0[1]
Website https://miso-lims.github.io/miso-lims/

MISO is a laboratory information management system (LIMS) that handles next-generation sequencing experiments, including tracking and recording sequencing metadata. It is open-source and freely available on Github[2].

History

MISO development began in 2010 by the Davey group at Earlham Institute. The first beta, free open-source version community release became available in 2012 [3][4][5].

In 2015, the Ontario Institute for Cancer Research (OICR) chose MISO as their new LIMS system and began to develop it to meet their needs[6]. The teams at Earlham and OICR worked out a development plan to better support multiple institutes with the same code base[7].

Features

MISO is a full-featured LIMS system that concentrates on tracking samples and laboratory processes for modern DNA and RNA sequencing from a number of platforms, including Illumina, PacBio, and Oxford Nanopore. The full list of features is available in the User Manual[8].

Product: MISO LIMS
Sample, inventory, and data management
Sample login and management?Y [8]
Sample tracking?Y [8]
Sample and/or result batching?Y [8]
Task and event scheduling?
Option for manual result entry?Y [8]
Multiple data viewing methods?Y [8]
Data and trend analysis?
Data and equipment sharing?Y [8]
Customizable fields and/or interface?Y [8]
Query capability?Y [8]
Import data?Y [8]
Internal file or data linking?Y [8]
External file or data linking?Y [8]
ELN support or integration?
Export data to MS Excel?Y [8]
Raw data management?Y [8]
Data warehouse?
Deadline control?
Production control?
Project and/or task management?
Inventory management?Y [8]
Document creation and/or management?Y [8]
Case management?
Workflow management?
Specification management?
Customer and supplier management?Y [8]
Billing management?
Quality, security, and compliance
Regulatory compliance?
QA / QC functions?Y [8]
Performance evaluation?
Audit trail?Y [8]
Chain of custody?Y [8]
Configurable roles and security?Y [8]
Data normalization?
Data validation?Y [8]
Data encryption?
Version control?
Automatic data backup?
Environmental monitoring?
Reporting, barcoding, and printing
Custom reporting?
Report printing?
Label support?Y [8]
Barcode support?Y [8]
Export to PDF?
Export to MS Word?
Export to HTML and/or XML?
Fax integration?
Email integration?
Base functionality
Administrator management?Y [8]
Modular?
Instrument interfacing and management?Y [8]
Mobile device integration?
Alarms and/or alerts?
Work-related time tracking?
Voice recognition system?
External monitoring?
Messaging?
Multilingual?
Network-capable?Y [8]
Web client or portal?Y [8]
Online or integrated help?Y [8]
Software as a service delivery model?
Usage-based cost?
Industries served
sequencing genomics


Media

  • July 2012: ISMB 2012 presentation[9] and poster[10]. MISO: An open-source LIMS for next-generation sequencing centres.
  • July 2016 : BOSC 2016 presentation[11][12] Enhancements to MISO: an open-source community-driven LIMS

External links

References

  1. ↑ 1.0 1.1 "MISO 0.1.6RC User Manual" (pdf). The Genome Analysis Centre. 2012. pp. 2–3. https://web.archive.org/web/20160429075804/http://www.tgac.ac.uk/misofiles/MISO-01.6.RC-User_Manual.pdf. Retrieved 30 September 2012. 
  2. ↑ {{cite web |url=https://github.com/miso-lims/miso-lims%7Ctitle=miso-lims/miso-lims : MISO: An open-source LIMS for NGS sequencing centres|accessdate=7 May 2019
  3. ↑ ""Release 0.1.6 on Github"". 26 July 2012. https://github.com/miso-lims/miso-lims/releases/tag/0.1.6. Retrieved 7 May 2019. 
  4. ↑ Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario (2012). "MISO: an open-source LIMS for small-to-large sequencing centres" (PDF). Faculty of 1000 Ltd. http://cdn.f1000.com/posters/docs/250776676. Retrieved 7 May 2019. 
  5. ↑ "TGAC launches MISO: A free open source LIMS for NGS". The Genome Analysis Centre. 23 July 2012. https://web.archive.org/web/20120731152633/http://www.tgac.ac.uk/news/31/68/TGAC-launches-MISO-A-free-open-source-LIMS-for-NGS/. Retrieved 30 September 2012. 
  6. ↑ "Contributors to miso-lims/miso-lims". https://github.com/miso-lims/miso-lims/graphs/contributors?from=2014-04-26&to=2016-06-17&type=c. Retrieved 7 May 2019. 
  7. ↑ "International collaboration cooks up powerful new software: MISO". https://news.oicr.on.ca/2017/02/international-collaboration-cooks-up-powerful-new-software-miso/. 
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 8.17 8.18 8.19 8.20 8.21 8.22 8.23 8.24 8.25 8.26 8.27 8.28 ""MISO: User Manual"". https://miso-lims.github.io/miso-lims/usr/user-manual-table-of-contents.html. Retrieved 7 May 2019. 
  9. ↑ Robert Davey. "MISO: An open-source LIMS for next-generation sequencing centres". https://f1000research.com/slides/1092117. Retrieved 7 May 2019. 
  10. ↑ Davey, Robert; Xingdong, Bian; Thanki, Anil; Caccamo, Mario (2012). "MISO: an open-source LIMS for small-to-large sequencing centres" (PDF). Faculty of 1000 Ltd. https://f1000research.com/posters/1092116. Retrieved 30 September 2012. 
  11. ↑ Masella, Andre; Taschuk, Morgan; Armstrong, Heather; Cooke, Dillan; Debat, Tony; Davey, Robert; Salt, Chris (2016). "MISO LIMS: HTS Management by Earlham Institute and Ontario Institute for Cancer Research". YouTube. https://www.youtube.com/watch?v=znrRsPip5D0. Retrieved 7 May 2019. 
  12. ↑ Masella, Andre; Taschuk, Morgan; Armstrong, Heather; Cooke, Dillan; Debat, Tony; Davey, Robert; Salt, Chris. "Enhancements to MISO: an open-source community-driven LIMS". F1000Research. https://f1000research.com/slides/5-1608. 
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