Difference between revisions of "Vendor:Stanford University School of Medicine"
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===MendeLIMS=== | ===MendeLIMS=== | ||
MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url= | MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=https://dna-discovery.stanford.edu/research/software/ |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=23 October 2019}}</ref> The software is free to download and use. | ||
For all sequencing-related software, see the research group's [ | For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page]. | ||
====Features==== | ====Features==== | ||
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{| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0" | {| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0" | ||
|- | |- | ||
! colspan="2"| Product: [ | ! colspan="2"| Product: [https://dna-discovery.stanford.edu/research/software/mendelims/ MendeLIMS] | ||
|- | |- | ||
| style="background-color:white; border-style:none;"| {{Databox LIMSfeature | | style="background-color:white; border-style:none;"| {{Databox LIMSfeature | ||
| sample_login_man = Y<ref name="MLUser">{{cite web |url=http://dna-discovery.stanford.edu/ | | sample_login_man = Y<ref name="MLUser">{{cite web |url=http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf |format=PDF |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide |publisher=Stanford University School of Medicine |date=03 June 2013 |accessdate=23 October 2019}}</ref> | ||
| sample_track = Y<ref name="MLUser" /> | | sample_track = Y<ref name="MLUser" /> | ||
| sample_batch = Y<ref name="MLUser" /> | | sample_batch = Y<ref name="MLUser" /> | ||
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====Pricing==== | ====Pricing==== | ||
The software is free to download and use. | The software is free to download and use. | ||
====Additional information==== | ====Additional information==== | ||
* [http://dna-discovery.stanford.edu/ | * [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide] | ||
* [http://dna-discovery.stanford.edu/ | * [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide] | ||
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended) | * [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended) | ||
* [http://mendelims.stanford.edu/ MendeLIMS demo site] | * [http://mendelims.stanford.edu/ MendeLIMS demo site] | ||
* [ | * [https://dna-discovery.stanford.edu/research/software/ Software from Ji Research Group] | ||
==References== | ==References== |
Revision as of 16:48, 23 October 2019
Industry | Education |
---|---|
Headquarters |
291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor Dean's Office, MC 5216, Stanford, California, U.S. |
Area served | U.S. |
Products |
Products list
|
Parent | Stanford University |
Divisions | Various |
Website | med.stanford.edu |
https://www.linkedin.com/company/1790 |
Stanford University School of Medicine is one of the oldest medical schools in the United States.
History
Technology and products
MendeLIMS
MendeLIMS is a laboratory information management system (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.[1] The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."[2] The software is free to download and use.
For all sequencing-related software, see the research group's web page.
Features
The following feature list(s) is/are derived solely from public, freely-available online information the vendor provides. A lack of a "Y" does not necessarily mean that the product doesn't have that feature. The lack of a "Y" could mean:
|
Pricing
The software is free to download and use.
Additional information
- MendeLIMS user guide
- MendeLIMS installation guide
- MendeLIMS download location (reading installation guide recommended)
- MendeLIMS demo site
- Software from Ji Research Group
References
- ↑ Grimes, Susan M.; Ji, Hanlee P. (2014). "MendeLIMS: A web-based laboratory information management system for clinical genome sequencing". BMC Bioinformatics 15: 290. doi:10.1186/1471-2105-15-290. PMC PMC4155081. PMID 25159034. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155081.
- ↑ "Ji Research Group - Software". Stanford University School of Medicine. https://dna-discovery.stanford.edu/research/software/. Retrieved 23 October 2019.
- ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 "MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide" (PDF). Stanford University School of Medicine. 3 June 2013. http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf. Retrieved 23 October 2019.