Difference between revisions of "AdLIMS"
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| developer = Giulio Spinozzi | | developer = Giulio Spinozzi | ||
| released = {{Start date|2014|03|20}} (20140320)<ref name="SFadLIMS">{{cite web |url=http://sourceforge.net/projects/adlims/ |title=adLIMS |publisher=SourceForge |accessdate=15 December 2015}}</ref> | | released = {{Start date|2014|03|20}} (20140320)<ref name="SFadLIMS">{{cite web |url=http://sourceforge.net/projects/adlims/ |title=adLIMS |publisher=SourceForge |accessdate=15 December 2015}}</ref> | ||
| discontinued = | | discontinued = Yes | ||
| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> | | frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> | ||
| programming language = PL/SQL, Java | | programming language = PL/SQL, Java | ||
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| website = <nowiki>http://sourceforge.net/projects/adlims</nowiki> | | website = <nowiki>http://sourceforge.net/projects/adlims</nowiki> | ||
}} | }} | ||
'''adLIMS''' | '''adLIMS''' was a free open-source [[laboratory information management system]] (LIMS) designed for PCR and next-generation sequencing labs. The software was an extension and customization of the [[ADempiere]] open-source enterprise resource planning (ERP) application. | ||
==Product history== | ==Product history== | ||
adLIMS was created out of a need to better streamline the workflow and data that came out of high-throughput integration site monitoring at the San Raffaele Telethon Institute for Gene Therapy. "Because of the huge amount of samples that we process every year, which result in hundreds of millions of sequencing reads," the developers claimed, "we need[ed] to standardize data management and tracking systems, building up a scalable and flexible structure with web-based interfaces..."<ref name="Calabria_adLIMS15">{{cite journal |title=adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies |journal=BMC Bioinformatics |author=Calabria, Andrea; Spinozzi, Giulio; Benedicenti, Fabrizio; Tenderini, Erika; Montini, Eugenio |volume=16 |issue=Suppl 9 |pages=S5 |year=2015 |doi=10.1186/1471-2105-16-S9-S5 |pmid=26051409 |pmc=PMC4464029 |accessdate=15 December 2015}}</ref> The team eventually settled on the free, open-source ADempiere ERP as a starting point because of its "high usability and modularity that grants high use-case flexibility and software scalability for custom solutions."<ref name="Calabria_adLIMS15" /> Lead developer Giulio Spinozzi created a SourceForge page for the finished product and uploaded the first version on March 20, 2014. A follow-up version (overwriting the original) arrived on September 24.<ref name="SFadLIMS" /> | adLIMS was created out of a need to better streamline the workflow and data that came out of high-throughput integration site monitoring at the San Raffaele Telethon Institute for Gene Therapy. "Because of the huge amount of samples that we process every year, which result in hundreds of millions of sequencing reads," the developers claimed, "we need[ed] to standardize data management and tracking systems, building up a scalable and flexible structure with web-based interfaces..."<ref name="Calabria_adLIMS15">{{cite journal |title=adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies |journal=BMC Bioinformatics |author=Calabria, Andrea; Spinozzi, Giulio; Benedicenti, Fabrizio; Tenderini, Erika; Montini, Eugenio |volume=16 |issue=Suppl 9 |pages=S5 |year=2015 |doi=10.1186/1471-2105-16-S9-S5 |pmid=26051409 |pmc=PMC4464029 |accessdate=15 December 2015}}</ref> The team eventually settled on the free, open-source ADempiere ERP as a starting point because of its "high usability and modularity that grants high use-case flexibility and software scalability for custom solutions."<ref name="Calabria_adLIMS15" /> Lead developer Giulio Spinozzi created a SourceForge page for the finished product and uploaded the first version on March 20, 2014. A follow-up version (overwriting the original) arrived on September 24.<ref name="SFadLIMS" /> | ||
As of May 2021, this project hasn't been updated for nearly seven years. The project is presumed abandoned or discontinued. | |||
==Features== | ==Features== | ||
Features of adLIMS | Features of adLIMS included: | ||
* sample management and tracking | * sample management and tracking | ||
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==Hardware/software requirements== | ==Hardware/software requirements== | ||
The following requirements | The following requirements existed for an installation of adLIMS: | ||
* Java 1.6+ | * Java 1.6+ | ||
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==Videos, screenshots, and other media== | ==Videos, screenshots, and other media== | ||
* A few screenshots | * A few screenshots could be found on the SourceForge website. | ||
==Entities using adLIMS== | ==Entities using adLIMS== | ||
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<!---Place all category tags here--> | <!---Place all category tags here--> | ||
[[Category: | [[Category:Discontinued or abandoned software (open source)]] | ||
Latest revision as of 17:54, 6 May 2021
 | |
| Original author(s) | Giulio Spinozzi |
|---|---|
| Developer(s) | Giulio Spinozzi |
| Initial release | March 20, 2014 (20140320)[1] |
| Discontinued |
20140320 (modified) (September 24, 2014) [±] |
| Written in | PL/SQL, Java |
| Operating system | Cross-platform |
| Type | Laboratory informatics software |
| License(s) | GNU General Public License v2.0 |
| Website | http://sourceforge.net/projects/adlims |
adLIMS was a free open-source laboratory information management system (LIMS) designed for PCR and next-generation sequencing labs. The software was an extension and customization of the ADempiere open-source enterprise resource planning (ERP) application.
Product history
adLIMS was created out of a need to better streamline the workflow and data that came out of high-throughput integration site monitoring at the San Raffaele Telethon Institute for Gene Therapy. "Because of the huge amount of samples that we process every year, which result in hundreds of millions of sequencing reads," the developers claimed, "we need[ed] to standardize data management and tracking systems, building up a scalable and flexible structure with web-based interfaces..."[2] The team eventually settled on the free, open-source ADempiere ERP as a starting point because of its "high usability and modularity that grants high use-case flexibility and software scalability for custom solutions."[2] Lead developer Giulio Spinozzi created a SourceForge page for the finished product and uploaded the first version on March 20, 2014. A follow-up version (overwriting the original) arrived on September 24.[1]
As of May 2021, this project hasn't been updated for nearly seven years. The project is presumed abandoned or discontinued.
Features
Features of adLIMS included:
- sample management and tracking
- experiment management
- administration management
- automated data entry
- reporting
- data backup
- export to PDF, XLS, CSV, etc.
- support for client-side interfaces
Hardware/software requirements
The following requirements existed for an installation of adLIMS:
- Java 1.6+
- PostgreSQL 9+
Videos, screenshots, and other media
- A few screenshots could be found on the SourceForge website.
Entities using adLIMS
San Raffaele Telethon Institute for Gene Therapy
Further reading
- Calabria, Andrea; Spinozzi, Giulio; Benedicenti, Fabrizio; Tenderini, Erika; Montini, Eugenio (2015). "adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies". BMC Bioinformatics 16 (Suppl 9): S5. doi:10.1186/1471-2105-16-S9-S5. PMC PMC4464029. PMID 26051409. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464029.
External links
- adLIMS can be found on SourceForge. However, use caution when downloading and installing from there; the install package may contain undesirable add-on software.
References
- ↑ 1.0 1.1 "adLIMS". SourceForge. http://sourceforge.net/projects/adlims/. Retrieved 15 December 2015.
- ↑ 2.0 2.1 Calabria, Andrea; Spinozzi, Giulio; Benedicenti, Fabrizio; Tenderini, Erika; Montini, Eugenio (2015). "adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies". BMC Bioinformatics 16 (Suppl 9): S5. doi:10.1186/1471-2105-16-S9-S5. PMC PMC4464029. PMID 26051409. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464029. Retrieved 15 December 2015.
