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<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Closha BMCBioinfo2018 19-Sup1.gif|240px]]</div>
<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Soto-Perdomo SoftwareX2023 24.jpg|240px]]</div>
'''"[[Journal:Closha: Bioinformatics workflow system for the analysis of massive sequencing data|Closha: Bioinformatics workflow system for the analysis of massive sequencing data]]"'''
'''"[[Journal:OptiGUI DataCollector: A graphical user interface for automating the data collecting process in optical and photonics labs|OptiGUI DataCollector: A graphical user interface for automating the data collecting process in optical and photonics labs]]"'''


While next-generation sequencing (NGS) costs have fallen in recent years, the cost and complexity of computation remain substantial obstacles to the use of NGS in bio-medical care and [[Genomics|genomic]] research. The rapidly increasing amounts of data available from the new high-throughput methods have made data processing infeasible without automated pipelines. The integration of data and analytic resources into workflow systems provides a solution to the problem by simplifying the task of data analysis.
OptiGUI DataCollector is a Python 3.8-based graphical user interface (GUI) that facilitates automated data collection in optics and photonics research and development equipment. It provides an intuitive and easy-to-use platform for controlling a wide range of optical instruments, including [[spectrometer]]s and lasers. OptiGUI DataCollector is a flexible and modular framework that enables simple integration with different types of devices. It simplifies experimental workflow and reduces human error by automating parameter control, data acquisition, and [[Data analysis|analysis]]. OptiGUI DataCollector is currently focused on optical mode conversion utilizing fiber optic technologies ... ('''[[Journal:OptiGUI DataCollector: A graphical user interface for automating the data collecting process in optical and photonics labs|Full article...]]''')<br />


To address this challenge, we developed a cloud-based workflow management system, Closha, to provide fast and cost-effective analysis of massive genomic data. We implemented complex workflows making optimal use of high-performance computing clusters. Closha allows users to create multi-step analyses using drag-and-drop functionality and to modify the parameters of pipeline tools. ('''[[Journal:Closha: Bioinformatics workflow system for the analysis of massive sequencing data|Full article...]]''')<br />
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Latest revision as of 15:05, 17 June 2024

Fig1 Soto-Perdomo SoftwareX2023 24.jpg

"OptiGUI DataCollector: A graphical user interface for automating the data collecting process in optical and photonics labs"

OptiGUI DataCollector is a Python 3.8-based graphical user interface (GUI) that facilitates automated data collection in optics and photonics research and development equipment. It provides an intuitive and easy-to-use platform for controlling a wide range of optical instruments, including spectrometers and lasers. OptiGUI DataCollector is a flexible and modular framework that enables simple integration with different types of devices. It simplifies experimental workflow and reduces human error by automating parameter control, data acquisition, and analysis. OptiGUI DataCollector is currently focused on optical mode conversion utilizing fiber optic technologies ... (Full article...)

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