Difference between revisions of "Vendor:Stanford University School of Medicine"

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|num_employees    =   
|num_employees    =   
|parent            =  Stanford University
|parent            =  Stanford University
|divisions        =  [http://med.stanford.edu/departments/ Various]
|divisions        =  [https://med.stanford.edu/school/directory.html Various]
|subsid            =   
|subsid            =   
|homepage          =  [http://med.stanford.edu/ med.stanford.edu]
|homepage          =  [https://med.stanford.edu/ med.stanford.edu]
|linkedin          =  [https://www.linkedin.com/company/1790 https://www.linkedin.com/company/1790]
|linkedin          =  [https://www.linkedin.com/school/stanford-university-school-of-medicine/ https://www.linkedin.com/school/stanford-university-school-of-medicine/]
|footnotes        =
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|intl              =  No
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==Technology and products==
==Technology and products==
===MendeLIMS===
===MendeLIMS===
MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=https://dna-discovery.stanford.edu/research/software/ |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=23 October 2019}}</ref> The software is free to download and use.


MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=http://dna-discovery.stanford.edu/software/index.html |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=22 May 2014}}</ref> The software is free to download and use.
For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page].


For all sequencing-related software, see the research group's [http://dna-discovery.stanford.edu/software/index.html web page].
====Pricing====
 
The software is free to download and use.
====Features====
 
{{Ombox productfeature}}
 
{| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"
|-
  ! colspan="2"| Product: [http://dna-discovery.stanford.edu/software/mendelims/ MendeLIMS]
|-
  | style="background-color:white; border-style:none;"| {{Databox LIMSfeature
| sample_login_man  = Y<ref name="MLUser">{{cite web |url=http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_UserGuide.pdf |format=PDF |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide |publisher=Stanford University School of Medicine |date=03 June 2013 |accessdate=22 May 2014}}</ref>
| sample_track      = Y<ref name="MLUser" />
| sample_batch      = Y<ref name="MLUser" />
| task_event_sched  =
| manual_entry      = Y<ref name="MLUser" />
| multiple_view      = Y<ref name="MLUser" />
| data_analysis      =
| data_sharing      =
| custom_fields      =
| query              = Y<ref name="MLUser" />
| import_data        =
| data_linking_int  =
| data_linking_ext  =
| eln_support        =
| export_msexcel    =
| export_raw        =
| data_warehouse    =
| deadline_control  =
| production_control =
| project_task_man  = Y<ref name="MLUser" />
| inventory_man      =
| document_man      =
| case_man          =
| workflow_man      =
| spec_man          =
| customer_man      = Y<ref name="MLUser" />
| billing_man        =
 
| reg_compliance    =
| qa_qc              =
| performance_eval  =
| audit_trail        =
| chain_custody      =
| roles_security    = Y<ref name="MLUser" />
| data_norm          =
| data_val          =
| data_encrypt      =
| version_control    =
| data_backup        =
| enviro_monitoring  =
 
| custom_reporting  = Y<ref name="MLUser" />
| report_printing    =
| label_support      =
| barcode_support    = Y<ref name="MLUser" />
| export_pdf        =
| export_msword      =
| export_htmlxml    =
| fax_integration    =
| email_integration  =
 
| admin_manage      = Y<ref name="MLUser" />
| modular            =
| instrument_inter  =
| mobile_device      =
| alarms_alerts      =
| work_timetrack    =
| voice_rec          =
| external_monitor  =
| messaging          =
| multilingual      =
| network            =
| web_client        = Y<ref name="MLUser" />
| online_help        =
| saas_model        =
| usage_cost        =


| industries        = biotechnology, life sciences
====Demonstration videos and other media====
}}
|-
|}


====Pricing====
The software is free to download and use.


====Additional information====
====Additional information====
 
* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide]
* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_Install.pdf MendeLIMS installation guide]
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
* [http://mendelims.stanford.edu/ MendeLIMS demo site]
* [http://mendelims.stanford.edu/ MendeLIMS demo site]
* [http://dna-discovery.stanford.edu/software/index.html Software from Ji Research Group]
* [https://dna-discovery.stanford.edu/research/software/ Software from Ji Research Group]


==References==
==References==
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<!---Place all category tags here-->
<!---Place all category tags here-->
[[Category:Biotechnology LIMS]]
[[Category:High-throughput sequencing LIMS]]
[[Category:Life sciences LIMS]]
[[Category:LIMS vendor]]
[[Category:LIMS vendor]]
[[Category:Vendors]]
[[Category:Vendors]]

Latest revision as of 15:14, 29 May 2024

Stanford University School of Medicine
Industry Education
Headquarters 291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor
Dean's Office, MC 5216, Stanford, California
, U.S.
Area served U.S.
Products
Parent Stanford University
Divisions Various
Website med.stanford.edu
LinkedIn https://www.linkedin.com/school/stanford-university-school-of-medicine/

Stanford University School of Medicine is one of the oldest medical schools in the United States.

History

Technology and products

MendeLIMS

MendeLIMS is a laboratory information management system (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.[1] The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."[2] The software is free to download and use.

For all sequencing-related software, see the research group's web page.

Pricing

The software is free to download and use.

Demonstration videos and other media

Additional information

References