Difference between revisions of "Vendor:Stanford University School of Medicine"

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|num_employees    =   
|num_employees    =   
|parent            =  Stanford University
|parent            =  Stanford University
|divisions        =  [http://med.stanford.edu/departments/ Various]
|divisions        =  [https://med.stanford.edu/school/directory.html Various]
|subsid            =   
|subsid            =   
|homepage          =  [http://med.stanford.edu/ med.stanford.edu]
|homepage          =  [https://med.stanford.edu/ med.stanford.edu]
|linkedin          =  [https://www.linkedin.com/company/1790 https://www.linkedin.com/company/1790]
|linkedin          =  [https://www.linkedin.com/school/stanford-university-school-of-medicine/ https://www.linkedin.com/school/stanford-university-school-of-medicine/]
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==Technology and products==
==Technology and products==
===MendeLIMS===
===MendeLIMS===
MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=https://dna-discovery.stanford.edu/research/software/ |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=23 October 2019}}</ref> The software is free to download and use.


MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=http://dna-discovery.stanford.edu/software/index.html |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=22 May 2014}}</ref> The software is free to download and use.
For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page].


For all sequencing-related software, see the research group's [http://dna-discovery.stanford.edu/software/index.html web page].
====Pricing====
 
The software is free to download and use.
====Features====
 
{{Ombox productfeature}}
 
{| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"
|-
  ! colspan="2"| Product: [http://dna-discovery.stanford.edu/software/mendelims/ MendeLIMS]
|-
  | style="background-color:white; border-style:none;"| {{Databox LIMSfeature
| sample_login_man  = Y<ref name="MLUser">{{cite web |url=http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_UserGuide.pdf |format=PDF |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide |publisher=Stanford University School of Medicine |date=03 June 2013 |accessdate=22 May 2014}}</ref>
| sample_track      = Y<ref name="MLUser" />
| sample_batch      = Y<ref name="MLUser" />
| task_event_sched  =
| manual_entry      = Y<ref name="MLUser" />
| multiple_view      = Y<ref name="MLUser" />
| data_analysis      =
| data_sharing      =
| custom_fields      =
| query              = Y<ref name="MLUser" />
| import_data        =
| data_linking_int  =
| data_linking_ext  =
| eln_support        =
| export_msexcel    =
| export_raw        =
| data_warehouse    =
| deadline_control  =
| production_control =
| project_task_man  = Y<ref name="MLUser" />
| inventory_man      =
| document_man      =
| case_man          =
| workflow_man      =
| spec_man          =
| customer_man      = Y<ref name="MLUser" />
| billing_man        =
 
| reg_compliance    =
| qa_qc              =
| performance_eval  =
| audit_trail        =
| chain_custody      =
| roles_security    = Y<ref name="MLUser" />
| data_norm          =
| data_val          =
| data_encrypt      =
| version_control    =
| data_backup        =
| enviro_monitoring  =
 
| custom_reporting  = Y<ref name="MLUser" />
| report_printing    =
| label_support      =
| barcode_support    = Y<ref name="MLUser" />
| export_pdf        =
| export_msword      =
| export_htmlxml    =
| fax_integration    =
| email_integration  =
 
| admin_manage      = Y<ref name="MLUser" />
| modular            =
| instrument_inter  =
| mobile_device      =
| alarms_alerts      =
| work_timetrack    =
| voice_rec          =
| external_monitor  =
| messaging          =
| multilingual      =
| network            =
| web_client        = Y<ref name="MLUser" />
| online_help        =
| saas_model        =
| usage_cost        =


| industries        = biotechnology, life sciences
====Demonstration videos and other media====
}}
|-
|}


====Pricing====
The software is free to download and use.


====Additional information====
====Additional information====
 
* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide]
* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_Install.pdf MendeLIMS installation guide]
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
* [http://mendelims.stanford.edu/ MendeLIMS demo site]
* [http://mendelims.stanford.edu/ MendeLIMS demo site]
* [http://dna-discovery.stanford.edu/software/index.html Software from Ji Research Group]
* [https://dna-discovery.stanford.edu/research/software/ Software from Ji Research Group]


==References==
==References==
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<!---Place all category tags here-->
<!---Place all category tags here-->
[[Category:Biotechnology LIMS]]
[[Category:High-throughput sequencing LIMS]]
[[Category:Life sciences LIMS]]
[[Category:LIMS vendor]]
[[Category:LIMS vendor]]
[[Category:Vendors]]
[[Category:Vendors]]

Latest revision as of 15:14, 29 May 2024

Stanford University School of Medicine
Industry Education
Headquarters 291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor
Dean's Office, MC 5216, Stanford, California, U.S.
Area served U.S.
Products
Parent Stanford University
Divisions Various
Website med.stanford.edu
LinkedIn https://www.linkedin.com/school/stanford-university-school-of-medicine/

Stanford University School of Medicine is one of the oldest medical schools in the United States.

History

Technology and products

MendeLIMS

MendeLIMS is a laboratory information management system (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.[1] The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."[2] The software is free to download and use.

For all sequencing-related software, see the research group's web page.

Pricing

The software is free to download and use.

Demonstration videos and other media

Additional information

References

  1. ↑ Grimes, Susan M.; Ji, Hanlee P. (2014). "MendeLIMS: A web-based laboratory information management system for clinical genome sequencing". BMC Bioinformatics 15: 290. doi:10.1186/1471-2105-15-290. PMC PMC4155081. PMID 25159034. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155081. 
  2. ↑ "Ji Research Group - Software". Stanford University School of Medicine. https://dna-discovery.stanford.edu/research/software/. Retrieved 23 October 2019. 
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