Difference between revisions of "Sesame LIMS"
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| developer = University of Wisconsin-Madison | | developer = University of Wisconsin-Madison | ||
| released = {{Start date|2000|03|20}}<ref name="SesFirst">{{cite web |url=http://www.sesame.wisc.edu/sesame_releasenotes.html |title=Sesame - Release Notes |publisher=University of Wisconsin-Madison |accessdate=25 September 2013}}</ref><ref name="SesFirstArch">{{cite web |archiveurl=http://web.archive.org/web/20030803204153/http://www.sesame.wisc.edu/sesame_news.html |url=http://www.sesame.wisc.edu/sesame_news.html |title=Sesame - News |publisher=University of Wisconsin-Madison |archivedate=03 August 2003 |accessdate=25 September 2013}}</ref> | | released = {{Start date|2000|03|20}}<ref name="SesFirst">{{cite web |url=http://www.sesame.wisc.edu/sesame_releasenotes.html |title=Sesame - Release Notes |publisher=University of Wisconsin-Madison |accessdate=25 September 2013}}</ref><ref name="SesFirstArch">{{cite web |archiveurl=http://web.archive.org/web/20030803204153/http://www.sesame.wisc.edu/sesame_news.html |url=http://www.sesame.wisc.edu/sesame_news.html |title=Sesame - News |publisher=University of Wisconsin-Madison |archivedate=03 August 2003 |accessdate=25 September 2013}}</ref> | ||
| discontinued = | | discontinued = 30 September 2012<ref name="USDASesame" /> | ||
| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> | | frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> | ||
| programming language = Java | | programming language = Java | ||
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}} | }} | ||
'''Sesame LIMS''' | '''Sesame LIMS''' was a free [[laboratory information management system]] (LIMS) solution that "supports the gathering, organization, processing, and analysis of information from a variety of sources, including databases, bench scientists, laboratory instrumentation, and software packages."<ref name="SLHome">{{cite web |url=http://www.sesame.wisc.edu/sesame_home.html |archiveurl=https://web.archive.org/web/20200212082501/http://www.sesame.wisc.edu/sesame_home.html |title=Sesame LIMS |publisher=University of Wisconsin-Madison |archivedate=12 February 2020 |accessdate=04 January 2024}}</ref> | ||
==Product history== | ==Product history== | ||
Sesame LIMS was based on a project designed by John Markley and Eldon Ulrich of the University of Wisconsin-Madison Biochemistry Department in 1997 for the development of a "Computerized Desk-Top Management System for Biomolecular NMR."<ref name="SesHist">{{cite web |url=http://www.sesame.wisc.edu/sesame_history.html |title=Sesame - History |publisher=University of Wisconsin-Madison |accessdate=25 September 2013}}</ref> The tools weren't able to sufficiently provide reliable results in the laboratory, and with demand for better biomolecular data management still high, developer Zsolt Zolnai led an effort in 1999 to create a new system: Sesame. With the help of special funding, Zolnai and others began work on a client-server computing infrastructure "to assist in managing and linking individual steps in a biomolecular NMR project and to allow remote collaborations and/or expert help at various stages."<ref name="Ses00Paper">{{cite web |archiveurl=http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame.pdf |url=http://www.sesame.wisc.edu/sesame.pdf |format=PDF |title=SESAME: an Experiment Management System for Biomolecular NMR |author=Lee, Peter T.; Li, Jing; Chapman, Michael R.; Volkman, Brian F.; Chae, Young Kee; Markley, John L.; Zolnai, Zsolt |publisher=University of Wisconsin-Madison |date=09 April 2000 |archivedate=31 March 2004 |accessdate=25 September 2013}}</ref><ref name="Ses00PaperOrigin">{{cite web |archiveurl=http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame_misc.html |url=http://www.sesame.wisc.edu/sesame_misc.html |title=More About Seasame |publisher=University of Wisconsin-Madison |archivedate=31 March 2004 |accessdate=25 September 2013}}</ref> The first usable structures became available on March 20, 2000<ref name="SesFirst" /><ref name="SesFirstArch" />, and the system was presented at the 41st Experimental NMR Conference in Asilomar, California on April 9–14.<ref name="Ses00PaperOrigin" /> Throughout the decade, additional modules were added as web-based Java applet-applications useful to researchers working in structural genomics, structural biology, and metabolomics.<ref name="SesFirst" /> The application was able to be used online via the university's hosted instance or installed as a private instance.<ref name="SLHome" /> | |||
According to the U.S. Department of Agriculture, the Sesame LIMS project was dicontinued on September 30, 2012.<ref name="USDASesame">{{cite web |url=https://reeis.usda.gov/web/crisprojectpages/0213000-sesame-lims.html |title=Sesame LIMS |work=Research, Education & Economics Information System |publisher=U.S. Department of Agriculture |date=30 September 2012 |accessdate=04 January 2024}}</ref> | |||
==Features== | ==Features== | ||
The current modules | The current modules were<ref name="SLHome" />: | ||
* Sheherazade: for wetlab, NMR, crystallization, cryo-EM, and much more | * Sheherazade: for wetlab, NMR, crystallization, cryo-EM, and much more | ||
| Line 44: | Line 45: | ||
==Hardware/software requirements== | ==Hardware/software requirements== | ||
Installation requirements, files, and instructions | Installation requirements, files, and instructions were listed on the [http://www.sesame.wisc.edu/sesame_installingsesame.html install page]. | ||
==Videos, screenshots, and other media== | ==Videos, screenshots, and other media== | ||
Demonstration videos | Demonstration videos were found on both [http://www.sesame.wisc.edu/sesame_videos.html the Sesame site] and [http://www.youtube.com/user/SesameLIMS YouTube]. | ||
Online help guides | Online help guides were [http://www.sesame.wisc.edu/sesame_helppages.html also available]. | ||
==Entities using Sesame LIMS== | ==Entities using Sesame LIMS== | ||
==Further reading== | ==Further reading== | ||
* {{cite journal |url=http://www.springerlink.com/content/p3u654x38832uv73/fulltext.pdf |format=PDF |title=Project management system for structural and functional proteomics: Sesame |journal=Journal of Structural and Functional Genomics |author=Zolnai, Zsolt; Lee, Peter T.; Li, Jing; Chapman, Michael R.; Newman, Craig S.; Phillips Jr., George N.; Rayment, Ivan; Ulrich, Eldon L.; Volkman, Brian F.; Markley, John L. |date=January 2003 |volume=4 |issue=1 |pages=11–23 |doi=10.1023/A:1024684404761}} | * {{cite journal |url=http://www.springerlink.com/content/p3u654x38832uv73/fulltext.pdf |format=PDF |title=Project management system for structural and functional proteomics: Sesame |journal=Journal of Structural and Functional Genomics |author=Zolnai, Zsolt; Lee, Peter T.; Li, Jing; Chapman, Michael R.; Newman, Craig S.; Phillips Jr., George N.; Rayment, Ivan; Ulrich, Eldon L.; Volkman, Brian F.; Markley, John L. |date=January 2003 |volume=4 |issue=1 |pages=11–23 |doi=10.1023/A:1024684404761}} | ||
==External links== | ==External links== | ||
<br /> | |||
==References== | ==References== | ||
<references /> | <references /> | ||
<!---Place all category tags here--> | <!---Place all category tags here--> | ||
[[Category: | [[Category:Discontinued or abandoned software (open source)]] | ||
Latest revision as of 00:42, 5 January 2024
 | |
| Original author(s) | Zsolt Zolnai |
|---|---|
| Developer(s) | University of Wisconsin-Madison |
| Initial release | March 20, 2000[1][2] |
| Written in | Java |
| Operating system | Cross-platform |
| Type | Laboratory informatics software |
| License(s) | Proprietary license |
| Website | sesame.wisc.edu |
Sesame LIMS was a free laboratory information management system (LIMS) solution that "supports the gathering, organization, processing, and analysis of information from a variety of sources, including databases, bench scientists, laboratory instrumentation, and software packages."[3]
Product history
Sesame LIMS was based on a project designed by John Markley and Eldon Ulrich of the University of Wisconsin-Madison Biochemistry Department in 1997 for the development of a "Computerized Desk-Top Management System for Biomolecular NMR."[4] The tools weren't able to sufficiently provide reliable results in the laboratory, and with demand for better biomolecular data management still high, developer Zsolt Zolnai led an effort in 1999 to create a new system: Sesame. With the help of special funding, Zolnai and others began work on a client-server computing infrastructure "to assist in managing and linking individual steps in a biomolecular NMR project and to allow remote collaborations and/or expert help at various stages."[5][6] The first usable structures became available on March 20, 2000[1][2], and the system was presented at the 41st Experimental NMR Conference in Asilomar, California on April 9–14.[6] Throughout the decade, additional modules were added as web-based Java applet-applications useful to researchers working in structural genomics, structural biology, and metabolomics.[1] The application was able to be used online via the university's hosted instance or installed as a private instance.[3]
According to the U.S. Department of Agriculture, the Sesame LIMS project was dicontinued on September 30, 2012.[7]
Features
The current modules were[3]:
- Sheherazade: for wetlab, NMR, crystallization, cryo-EM, and much more
- Sundial: for spectrometer schedules and time requests
- Lamp: for metabolomics
- Jar: for target requests
- Well: for crystallization, cryo-EM, and NMR screens
- Camel: for NMR
- Rukh: for Y2H screens and requests, V screens, and C screens
- Bazaar: for lab administration
- Jafar: for the TargetTrack browser
Hardware/software requirements
Installation requirements, files, and instructions were listed on the install page.
Videos, screenshots, and other media
Demonstration videos were found on both the Sesame site and YouTube.
Online help guides were also available.
Entities using Sesame LIMS
Further reading
- Zolnai, Zsolt; Lee, Peter T.; Li, Jing; Chapman, Michael R.; Newman, Craig S.; Phillips Jr., George N.; Rayment, Ivan; Ulrich, Eldon L.; Volkman, Brian F.; Markley, John L. (January 2003). "Project management system for structural and functional proteomics: Sesame" (PDF). Journal of Structural and Functional Genomics 4 (1): 11–23. doi:10.1023/A:1024684404761. http://www.springerlink.com/content/p3u654x38832uv73/fulltext.pdf.
External links
References
- ↑ 1.0 1.1 1.2 "Sesame - Release Notes". University of Wisconsin-Madison. http://www.sesame.wisc.edu/sesame_releasenotes.html. Retrieved 25 September 2013.
- ↑ 2.0 2.1 "Sesame - News". University of Wisconsin-Madison. Archived from the original on 03 August 2003. http://web.archive.org/web/20030803204153/http://www.sesame.wisc.edu/sesame_news.html. Retrieved 25 September 2013.
- ↑ 3.0 3.1 3.2 "Sesame LIMS". University of Wisconsin-Madison. Archived from the original on 12 February 2020. https://web.archive.org/web/20200212082501/http://www.sesame.wisc.edu/sesame_home.html. Retrieved 04 January 2024.
- ↑ "Sesame - History". University of Wisconsin-Madison. http://www.sesame.wisc.edu/sesame_history.html. Retrieved 25 September 2013.
- ↑ Lee, Peter T.; Li, Jing; Chapman, Michael R.; Volkman, Brian F.; Chae, Young Kee; Markley, John L.; Zolnai, Zsolt (9 April 2000). "SESAME: an Experiment Management System for Biomolecular NMR" (PDF). University of Wisconsin-Madison. Archived from the original on 31 March 2004. http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame.pdf. Retrieved 25 September 2013.
- ↑ 6.0 6.1 "More About Seasame". University of Wisconsin-Madison. Archived from the original on 31 March 2004. http://web.archive.org/web/20040331043530/http://www.sesame.wisc.edu/sesame_misc.html. Retrieved 25 September 2013.
- ↑ "Sesame LIMS". Research, Education & Economics Information System. U.S. Department of Agriculture. 30 September 2012. https://reeis.usda.gov/web/crisprojectpages/0213000-sesame-lims.html. Retrieved 04 January 2024.
