Difference between revisions of "PiMS"
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| developer = [http://pims.structuralbiology.eu/docs/participantsPiMS.html PiMS development team] | | developer = [http://pims.structuralbiology.eu/docs/participantsPiMS.html PiMS development team] | ||
| released = {{Start date|2006|11|02}}<ref name="PiMS10">{{cite web |url=http://pims.structuralbiology.eu/docs/changes/V1_0_0.html |title=PiMS Defect Tracker - Issue Navigator |publisher=Computational Centre for Integrated Structural Biology |date=12 January 2007 |accessdate=25 September 2013}}</ref> | | released = {{Start date|2006|11|02}}<ref name="PiMS10">{{cite web |url=http://pims.structuralbiology.eu/docs/changes/V1_0_0.html |title=PiMS Defect Tracker - Issue Navigator |publisher=Computational Centre for Integrated Structural Biology |date=12 January 2007 |accessdate=25 September 2013}}</ref> | ||
| discontinued = | | discontinued = yes | ||
| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> | | frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! --> | ||
| programming language = Java | | programming language = Java | ||
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}} | }} | ||
'''PiMS''' | '''PiMS''' was a free [[laboratory information management system]] (LIMS) solution that "enables researchers to enter data, track samples and report results during the production of recombinant proteins for structural and functional applications."<ref name="PLAbout">{{cite web |url=http://pims.structuralbiology.eu/docs/aboutPiMS.html |title=PiMS Community Model |publisher=Computational Centre for Integrated Structural Biology |accessdate=25 September 2013}}</ref> The free version was meant for academic use, though a commercial version of the software was also available. | ||
==Product history== | ==Product history== | ||
| Line 34: | Line 34: | ||
==Features== | ==Features== | ||
Features | Features included: | ||
* sample management and tracking | * sample management and tracking | ||
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==Hardware/software requirements== | ==Hardware/software requirements== | ||
The installation requirements | The installation requirements weren't clear. | ||
To download and install a free version for academic use, see [http://pims.structuralbiology.eu/docs/downloadPiMS.html the download page] for more information. | To download and install a free version for academic use, see [http://pims.structuralbiology.eu/docs/downloadPiMS.html the download page] for more information. | ||
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* {{cite journal |url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/ |title=Recording information on protein complexes in an information management system |journal=Journal of Structural Biology |author=Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. |date=August 2011 |volume=175 |issue=2-2 |pages=224–229 |doi=10.1016/j.jsb.2011.05.009}} | * {{cite journal |url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/ |title=Recording information on protein complexes in an information management system |journal=Journal of Structural Biology |author=Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. |date=August 2011 |volume=175 |issue=2-2 |pages=224–229 |doi=10.1016/j.jsb.2011.05.009}} | ||
* {{cite journal | * {{cite journal |title=The Protein Information Management System (PiMS): A generic tool for any structural biology research laboratory |journal=Acta Crystallographica Section D |author=Morris, Chris; Pajon, A.; Griffiths, Susanne L.; Daniel, Edward; Savitsky, Marc; Lin, Bill; Diprose, Jonathan M.; Wilter da Silva, A.; Pilicheva, K.; Troshin, P.; van Niekerk, J.; Isaacs, N.; Naismith, J.; Nave, C.; Blake, Richard; Wilson, Keith S.; Stuart, David I.; Henrick, K.; Esnouf, Robert M. |volume=67 |issue=4 |pages=249–260 |year=2011 |doi=10.1107/S0907444911007943 |pmid=21460443 |pmc=PMC3069740}} | ||
==External links== | ==External links== | ||
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<!---Place all category tags here--> | <!---Place all category tags here--> | ||
[[Category: | [[Category:Discontinued or abandoned software (open source)]] | ||
Latest revision as of 16:44, 4 May 2021
 | |
| Developer(s) | PiMS development team |
|---|---|
| Initial release | November 2, 2006[1] |
| Discontinued |
4.4 (February 1, 2012) [±] |
| Written in | Java |
| Operating system | Cross-platform |
| Type | Laboratory informatics software |
| License(s) | Proprietary academic license (Word doc) |
| Website | PiMS-LIMS.org |
PiMS was a free laboratory information management system (LIMS) solution that "enables researchers to enter data, track samples and report results during the production of recombinant proteins for structural and functional applications."[2] The free version was meant for academic use, though a commercial version of the software was also available.
Product history
PiMS funding came from the BBSRC SPoRT consortia of the Scottish Structural Proteomics Facility (SSPF) and the Membrane Protein Structure Initiative (MPSI), starting in January 2005.[3][4] A working version 1.0 of the software was released was released on November 2, 2006.[1] Version 2.0 of the software arrived exactly a year later, with 3.0 releasing on July 8, 2008 and version 4.0 on January 1, 2010.[5]
On December 3, 2012, the PiMS Project Steering Board announced a commercial version of the software, PiMS Pro, would become available through partner Emerald Bio.[6]
The PiMS development team ended support for the software on March 30, 2015, and development is assumed to be dead.[7]
Features
Features included:
- sample management and tracking
- experiment and project management
- query tools
- workflow management
- web-based
- results recording and analysis
- reporting
- inventory management
- document management
Hardware/software requirements
The installation requirements weren't clear.
To download and install a free version for academic use, see the download page for more information.
Videos, screenshots, and other media
Entities using PiMS
Further reading
- Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. (August 2011). "Recording information on protein complexes in an information management system". Journal of Structural Biology 175 (2-2): 224–229. doi:10.1016/j.jsb.2011.05.009. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/.
- Morris, Chris; Pajon, A.; Griffiths, Susanne L.; Daniel, Edward; Savitsky, Marc; Lin, Bill; Diprose, Jonathan M.; Wilter da Silva, A.; Pilicheva, K.; Troshin, P.; van Niekerk, J.; Isaacs, N.; Naismith, J.; Nave, C.; Blake, Richard; Wilson, Keith S.; Stuart, David I.; Henrick, K.; Esnouf, Robert M. (2011). "The Protein Information Management System (PiMS): A generic tool for any structural biology research laboratory". Acta Crystallographica Section D 67 (4): 249–260. doi:10.1107/S0907444911007943. PMC PMC3069740. PMID 21460443. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3069740.
External links
References
- ↑ 1.0 1.1 "PiMS Defect Tracker - Issue Navigator". Computational Centre for Integrated Structural Biology. 12 January 2007. http://pims.structuralbiology.eu/docs/changes/V1_0_0.html. Retrieved 25 September 2013.
- ↑ "PiMS Community Model". Computational Centre for Integrated Structural Biology. http://pims.structuralbiology.eu/docs/aboutPiMS.html. Retrieved 25 September 2013.
- ↑ "What is PiMS?". Computational Centre for Integrated Structural Biology. http://pims.structuralbiology.eu/docs/about.html. Retrieved 25 September 2013.
- ↑ Esnouf, Robert (23 September 2008). "Data Management and Protein Production – from Lab Notebooks to LIMS" (PPT). Oxford Protein Production Facility. http://www.ebi.ac.uk/pdbe/docs/embo08/talks/EMBOpims.ppt. Retrieved 25 September 2013.
- ↑ "/frontpage/changes". Computational Centre for Integrated Structural Biology. http://pims.structuralbiology.eu/docs/changes/. Retrieved 25 September 2013.
- ↑ "PiMS Pro(TM) available for commercial use". The University of Oxford. 3 December 2012. http://www.structuralbiology.eu/support/whats-on/news/pims-protm-available-commercial-use. Retrieved 25 September 2013.
- ↑ "Download PiMS". Computational Centre for Integrated Structural Biology. Archived from the original on 05 May 2015. https://web.archive.org/web/20150505171630/http://pims.structuralbiology.eu/docs/downloadPiMS.html. Retrieved 05 May 2015.
