Difference between revisions of "Vendor:Stanford University School of Medicine"

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===MendeLIMS===
===MendeLIMS===


MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=http://dna-discovery.stanford.edu/software/index.html |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=22 May 2014}}</ref> The software is free to download and use.
MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing |journal=BMC Bioinformatics |author=Grimes, Susan M.; Ji, Hanlee P. |volume=15 |pages=290 |year=2014 |doi=10.1186/1471-2105-15-290 |pmid=25159034 |pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=https://dna-discovery.stanford.edu/research/software/ |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=23 October 2019}}</ref> The software is free to download and use.


For all sequencing-related software, see the research group's [http://dna-discovery.stanford.edu/software/index.html web page].
For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page].


====Features====
====Features====
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{| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"
{| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"
  |-
  |-
   ! colspan="2"| Product: [http://dna-discovery.stanford.edu/software/mendelims/ MendeLIMS]
   ! colspan="2"| Product: [https://dna-discovery.stanford.edu/research/software/mendelims/ MendeLIMS]
  |-
  |-
   | style="background-color:white; border-style:none;"| {{Databox LIMSfeature
   | style="background-color:white; border-style:none;"| {{Databox LIMSfeature
| sample_login_man  = Y<ref name="MLUser">{{cite web |url=http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_UserGuide.pdf |format=PDF |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide |publisher=Stanford University School of Medicine |date=03 June 2013 |accessdate=22 May 2014}}</ref>
| sample_login_man  = Y<ref name="MLUser">{{cite web |url=http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf |format=PDF |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide |publisher=Stanford University School of Medicine |date=03 June 2013 |accessdate=23 October 2019}}</ref>
| sample_track      = Y<ref name="MLUser" />
| sample_track      = Y<ref name="MLUser" />
| sample_batch      = Y<ref name="MLUser" />
| sample_batch      = Y<ref name="MLUser" />
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====Pricing====
====Pricing====
The software is free to download and use.
The software is free to download and use.


====Additional information====
====Additional information====


* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_Install.pdf MendeLIMS installation guide]
* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide]
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
* [http://mendelims.stanford.edu/ MendeLIMS demo site]
* [http://mendelims.stanford.edu/ MendeLIMS demo site]
* [http://dna-discovery.stanford.edu/software/index.html Software from Ji Research Group]
* [https://dna-discovery.stanford.edu/research/software/ Software from Ji Research Group]


==References==
==References==

Revision as of 16:48, 23 October 2019

Stanford University School of Medicine
Industry Education
Headquarters 291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor
Dean's Office, MC 5216, Stanford, California, U.S.
Area served U.S.
Products
Parent Stanford University
Divisions Various
Website med.stanford.edu
LinkedIn https://www.linkedin.com/company/1790

Stanford University School of Medicine is one of the oldest medical schools in the United States.

History

Technology and products

MendeLIMS

MendeLIMS is a laboratory information management system (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.[1] The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."[2] The software is free to download and use.

For all sequencing-related software, see the research group's web page.

Features

The following feature list(s) is/are derived solely from public, freely-available online information the vendor provides. A lack of a "Y" does not necessarily mean that the product doesn't have that feature. The lack of a "Y" could mean:
  • the vendor chose to not put relevant feature information online despite its existence in the product.
  • the vendor chooses to make the feature information available only to those who create an account or call/e-mail.
  • the feature information exists online to the public, but a URL could not be found to cite the existence of the feature.
  • the feature does not exist for the product.
A vendor's product may receive more confirmed features with the addition of more public information to the vendor's site and/or by providing a URL to a page or document that can act as a citation for the existence of the feature. Prospective buyers are highly recommended to contact the vendor directly to verify features as this list isn't authoritative, and product upgrades and changes happen rapidly in some cases.
Product: MendeLIMS
Sample, inventory, and data management
Sample login and management?Y[3]
Sample tracking?Y[3]
Sample and/or result batching?Y[3]
Task and event scheduling?
Option for manual result entry?Y[3]
Multiple data viewing methods?Y[3]
Data and trend analysis?
Data and equipment sharing?
Customizable fields and/or interface?
Query capability?Y[3]
Import data?
Internal file or data linking?
External file or data linking?
ELN support or integration?
Export data to MS Excel?
Raw data management?
Data warehouse?
Deadline control?
Production control?
Project and/or task management?Y[3]
Inventory management?
Document creation and/or management?
Case management?
Workflow management?
Specification management?
Customer and supplier management?Y[3]
Billing management?
Quality, security, and compliance
Regulatory compliance?
QA / QC functions?
Performance evaluation?
Audit trail?
Chain of custody?
Configurable roles and security?Y[3]
Data normalization?
Data validation?
Data encryption?
Version control?
Automatic data backup?
Environmental monitoring?
Reporting, barcoding, and printing
Custom reporting?Y[3]
Report printing?
Label support?
Barcode support?Y[3]
Export to PDF?
Export to MS Word?
Export to HTML and/or XML?
Fax integration?
Email integration?
Base functionality
Administrator management?Y[3]
Modular?
Instrument interfacing and management?
Mobile device integration?
Alarms and/or alerts?
Work-related time tracking?
Voice recognition system?
External monitoring?
Messaging?
Multilingual?
Network-capable?
Web client or portal?Y[3]
Online or integrated help?
Software as a service delivery model?
Usage-based cost?
Industries served
biotechnology, high-throughput sequencing, life sciences

Pricing

The software is free to download and use.

Additional information

References

  1. ↑ Grimes, Susan M.; Ji, Hanlee P. (2014). "MendeLIMS: A web-based laboratory information management system for clinical genome sequencing". BMC Bioinformatics 15: 290. doi:10.1186/1471-2105-15-290. PMC PMC4155081. PMID 25159034. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155081. 
  2. ↑ "Ji Research Group - Software". Stanford University School of Medicine. https://dna-discovery.stanford.edu/research/software/. Retrieved 23 October 2019. 
  3. ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 "MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide" (PDF). Stanford University School of Medicine. 3 June 2013. http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf. Retrieved 23 October 2019. 
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