Difference between revisions of "File:Fig2 Ye JofPathInformatics2016 7.jpg"

Latest revision as of 22:26, 16 November 2016

Description	Figure 2. Content of text file (.txt) containing elements of interest that are to be extracted from the text of melanoma synoptic report. This file is read into memory by the line `mycolnames<-read.table("./melcolnames.txt", sep="\n", stringsAsFactors = FALSE)$V1` in the R script. Each line of the file is used in line `pattern <-paste0(mycolnames[i],"(.*)?\r\n")` to form portion of a Regular Expression text pattern for data element extraction; the extraction is performed in the immediate following line `element <-str_match (ms$finding_text, pattern)[,2]`.
Source	Ye, J.J. (2016). "Pathology report data extraction from relational database using R, with extraction from reports on melanoma of skin as an example". Journal of Pathology Informatics 7: 44. doi:10.4103/2153-3539.192822.
Date	2016
Author	Ye, J.J.
Permission (Reusing this file)	Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
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+==Summary==
+{{Information
+|Description='''Figure 2.''' Content of text file (.txt) containing elements of interest that are to be extracted from the text of melanoma synoptic report. This file is read into memory by the line <code>mycolnames<-read.table("./melcolnames.txt", sep="\n", stringsAsFactors = FALSE)$V1</code> in the R script. Each line of the file is used in line <code>pattern <-paste0(mycolnames[i],"(.*)?\r\n")</code> to form portion of a Regular Expression text pattern for data element extraction; the extraction is performed in the immediate following line <code>element <-str_match (ms$finding_text, pattern)[,2]</code>.
+|Source={{cite journal |journal=Journal of Pathology Informatics |title=Pathology report data extraction from relational database using R, with extraction from reports on melanoma of skin as an example |author=Ye, J.J. |volume=7 |pages=44 |year=2016 |doi=10.4103/2153-3539.192822}}
+|Author=Ye, J.J.
+|Date=2016
+|Permission=[http://creativecommons.org/licenses/by-nc-sa/3.0/ Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported]
+}}
 == Licensing ==
 {{cc-by-nc-sa-3.0}}