Difference between revisions of "File:Fig4 Hernandez BMCSystemsBiology2014 8-Suppl2.jpg"
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==Summary== | |||
{{Information | |||
|Description='''Figure 4. Example of primary and secondary workflow for a DNase-seq analysis.''' Primary workflow (a) involves calling DNase hypersensitivity regions (DHR) by applying a peak-calling algorithm to a BAM file of mapped reads whereas secondary workflow (b) involves merging of DHR.bed files from different samples to obtain a set of consolidated regions and then counting the number of reads of each sample in the consolidated region set to generate a per-sample signal value file. | |||
|Source={{cite journal |title=STATegra EMS: An experiment management system for complex next-generation omics experiments |journal=BMC Systems Biology |author=Hernández-de-Diego, R.; Boix-Chova, N.; Gómez-Cabrero, D.; Tegner, J.; Abugessaisa, I.; Conesa, A. |volume=8 |issue=Suppl 2 |pages=S9 |year=2014 |issn=1752-0509}} | |||
|Author=Hernández-de-Diego, R.; Boix-Chova, N.; Gómez-Cabrero, D.; Tegner, J.; Abugessaisa, I.; Conesa, A. | |||
|Date=2014 | |||
|Permission=[http://creativecommons.org/licenses/by/2.0 Creative Commons Attribution 2.0 Generic] | |||
}} | |||
== Licensing == | == Licensing == | ||
{{cc-by-2.0}} | {{cc-by-2.0}} | ||
Latest revision as of 23:43, 14 March 2016
Summary
| Description |
Figure 4. Example of primary and secondary workflow for a DNase-seq analysis. Primary workflow (a) involves calling DNase hypersensitivity regions (DHR) by applying a peak-calling algorithm to a BAM file of mapped reads whereas secondary workflow (b) involves merging of DHR.bed files from different samples to obtain a set of consolidated regions and then counting the number of reads of each sample in the consolidated region set to generate a per-sample signal value file. |
|---|---|
| Source |
Hernández-de-Diego, R.; Boix-Chova, N.; Gómez-Cabrero, D.; Tegner, J.; Abugessaisa, I.; Conesa, A. (2014). "STATegra EMS: An experiment management system for complex next-generation omics experiments". BMC Systems Biology 8 (Suppl 2): S9. ISSN 1752-0509. |
| Date |
2014 |
| Author |
Hernández-de-Diego, R.; Boix-Chova, N.; Gómez-Cabrero, D.; Tegner, J.; Abugessaisa, I.; Conesa, A. |
| Permission (Reusing this file) |
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This work is licensed under the Creative Commons Attribution 2.0 License. |
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