Vendor:Stanford University School of Medicine - Revision history

Shawndouglas: Removing feature table from all vendors, due to recent change in direction with vendors.

2024-05-29T15:14:28Z

Removing feature table from all vendors, due to recent change in direction with vendors.

← Older revision		Revision as of 15:14, 29 May 2024
Line 47:		Line 47:

	==Technology and products==		==Technology and products==

	===MendeLIMS===		===MendeLIMS===

	MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing \|journal=BMC Bioinformatics \|author=Grimes, Susan M.; Ji, Hanlee P. \|volume=15 \|pages=290 \|year=2014 \|doi=10.1186/1471-2105-15-290 \|pmid=25159034 \|pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web \|url=https://dna-discovery.stanford.edu/research/software/ \|title=Ji Research Group - Software \|publisher=Stanford University School of Medicine \|accessdate=23 October 2019}}</ref> The software is free to download and use.		MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing \|journal=BMC Bioinformatics \|author=Grimes, Susan M.; Ji, Hanlee P. \|volume=15 \|pages=290 \|year=2014 \|doi=10.1186/1471-2105-15-290 \|pmid=25159034 \|pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web \|url=https://dna-discovery.stanford.edu/research/software/ \|title=Ji Research Group - Software \|publisher=Stanford University School of Medicine \|accessdate=23 October 2019}}</ref> The software is free to download and use.

	For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page].		For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page].

	====~~Features~~====		====Pricing====
			The software is free to download and use.
	~~{{Ombox productfeature}}~~

	~~{\| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"~~
	\|-
	~~! colspan="2"\| Product: [https://dna-discovery.stanford.edu/research/~~software~~/mendelims/ MendeLIMS]~~
	\|-
	~~\| style="background-color:white; border-style:none;"\| {{Databox LIMSfeature~~
	~~\| sample_login_man = Y<ref name="MLUser">{{cite web \|url=https://dna-discovery.stanford~~.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf \|format=PDF \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide \|publisher=Stanford University School of Medicine \|date=03 June 2013 \|accessdate=08 October 2021}}</ref>
	~~\| sample_track = Y<ref name="MLUser" />~~
	~~\| sample_batch = Y<ref name="MLUser" />~~
	~~\| task_event_sched =~~
	~~\| manual_entry = Y<ref name="MLUser" />~~
	~~\| multiple_view = Y<ref name="MLUser" />~~
	~~\| data_analysis =~~
	~~\| data_sharing =~~
	~~\| custom_fields =~~
	~~\| query = Y<ref name="MLUser" />~~
	~~\| import_data =~~
	~~\| data_linking_int =~~
	~~\| data_linking_ext =~~
	~~\| eln_support =~~
	~~\| export_msexcel =~~
	~~\| export_raw =~~
	~~\| data_warehouse =~~
	~~\| deadline_control =~~
	~~\| production_control =~~
	~~\| project_task_man = Y<ref name="MLUser" />~~
	~~\| inventory_man =~~
	~~\| document_man =~~
	~~\| case_man =~~
	~~\| workflow_man =~~
	~~\| spec_man =~~
	~~\| customer_man = Y<ref name="MLUser" />~~
	~~\| billing_man =~~

	~~\| reg_compliance =~~
	~~\| qa_qc =~~
	~~\| performance_eval =~~
	~~\| audit_trail =~~
	~~\| chain_custody =~~
	~~\| roles_security = Y<ref name="MLUser" />~~
	~~\| data_norm =~~
	~~\| data_val =~~
	~~\| data_encrypt =~~
	~~\| version_control =~~
	~~\| data_backup =~~
	~~\| enviro_monitoring =~~

	~~\| custom_reporting = Y<ref name="MLUser" />~~
	~~\| report_printing =~~
	~~\| label_support =~~
	~~\| barcode_support = Y<ref name="MLUser" />~~
	~~\| export_pdf =~~
	~~\| export_msword =~~
	~~\| export_htmlxml =~~
	~~\| fax_integration =~~
	~~\| email_integration =~~

	~~\| admin_manage = Y<ref name="MLUser" />~~
	~~\| modular =~~
	~~\| instrument_inter =~~
	~~\| mobile_device =~~
	~~\| alarms_alerts =~~
	~~\| work_timetrack =~~
	~~\| voice_rec =~~
	~~\| external_monitor =~~
	~~\| messaging =~~
	~~\| multilingual =~~
	~~\| network =~~
	~~\| web_client = Y<ref name="MLUser" />~~
	~~\| online_help =~~
	~~\| saas_model =~~
	~~\| usage_cost =~~

	~~\| industries~~ = ~~high-throughput sequencing~~		====Demonstration videos and other media====
	}}
	\|-
	\|}

	~~====Pricing====~~
	~~The software is free to download and use.~~

	====Additional information====		====Additional information====

	* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide]		* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
	* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide]		* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide]

Move page script: Move page script moved page Stanford University School of Medicine to Vendor:Stanford University School of Medicine without leaving a redirect

2024-03-27T19:05:32Z

Move page script moved page Stanford University School of Medicine to Vendor:Stanford University School of Medicine without leaving a redirect

← Older revision

Revision as of 19:05, 27 March 2024

Shawndouglas: Industries and cats

2022-03-02T23:11:07Z

Industries and cats

← Older revision		Revision as of 23:11, 2 March 2022
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	\| usage_cost =		\| usage_cost =

	\| industries = ~~biotechnology,~~ high-throughput sequencing~~, life sciences~~		\| industries = high-throughput sequencing
	}}		}}
	\|-		\|-
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	~~[[Category:Biotechnology LIMS]]~~
	[[Category:High-throughput sequencing LIMS]]		[[Category:High-throughput sequencing LIMS]]
	~~[[Category:Life sciences LIMS]]~~
	[[Category:LIMS vendor]]		[[Category:LIMS vendor]]
	[[Category:Vendors]]		[[Category:Vendors]]

Shawndouglas: Updated due to website changes

2021-10-08T17:57:26Z

Updated due to website changes

← Older revision		Revision as of 17:57, 8 October 2021
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	\|num_employees =		\|num_employees =
	\|parent = Stanford University		\|parent = Stanford University
	\|divisions = [~~http~~://med.stanford.edu/~~departments~~/ Various]		\|divisions = [https://med.stanford.edu/school/directory.html Various]
	\|subsid =		\|subsid =
	\|homepage = [~~http~~://med.stanford.edu/ med.stanford.edu]		\|homepage = [https://med.stanford.edu/ med.stanford.edu]
	\|linkedin = [https://www.linkedin.com/~~company~~/~~1790~~ https://www.linkedin.com/~~company~~/~~1790~~]		\|linkedin = [https://www.linkedin.com/school/stanford-university-school-of-medicine/ https://www.linkedin.com/school/stanford-university-school-of-medicine/]
	\|footnotes =		\|footnotes =
	\|intl = No		\|intl = No
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	\|-		\|-
	\| style="background-color:white; border-style:none;"\| {{Databox LIMSfeature		\| style="background-color:white; border-style:none;"\| {{Databox LIMSfeature
	\| sample_login_man = Y<ref name="MLUser">{{cite web \|url=~~http~~://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf \|format=PDF \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide \|publisher=Stanford University School of Medicine \|date=03 June 2013 \|accessdate=23 October ~~2019~~}}</ref>		\| sample_login_man = Y<ref name="MLUser">{{cite web \|url=https://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf \|format=PDF \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide \|publisher=Stanford University School of Medicine \|date=03 June 2013 \|accessdate=08 October 2021}}</ref>
	\| sample_track = Y<ref name="MLUser" />		\| sample_track = Y<ref name="MLUser" />
	\| sample_batch = Y<ref name="MLUser" />		\| sample_batch = Y<ref name="MLUser" />

Shawndouglas: Updated due to website changes

2019-10-23T16:48:33Z

Updated due to website changes

← Older revision		Revision as of 16:48, 23 October 2019
Line 50:		Line 50:
	===MendeLIMS===		===MendeLIMS===

	MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing \|journal=BMC Bioinformatics \|author=Grimes, Susan M.; Ji, Hanlee P. \|volume=15 \|pages=290 \|year=2014 \|doi=10.1186/1471-2105-15-290 \|pmid=25159034 \|pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web \|url=~~http~~://dna-discovery.stanford.edu/software/~~index.html~~ \|title=Ji Research Group - Software \|publisher=Stanford University School of Medicine \|accessdate=~~22 May 2014~~}}</ref> The software is free to download and use.		MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing \|journal=BMC Bioinformatics \|author=Grimes, Susan M.; Ji, Hanlee P. \|volume=15 \|pages=290 \|year=2014 \|doi=10.1186/1471-2105-15-290 \|pmid=25159034 \|pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web \|url=https://dna-discovery.stanford.edu/research/software/ \|title=Ji Research Group - Software \|publisher=Stanford University School of Medicine \|accessdate=23 October 2019}}</ref> The software is free to download and use.

	For all sequencing-related software, see the research group's [~~http~~://dna-discovery.stanford.edu/software/~~index.html~~ web page].		For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page].

	====Features====		====Features====
Line 60:		Line 60:
	{\| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"		{\| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"
	\|-		\|-
	! colspan="2"\| Product: [~~http~~://dna-discovery.stanford.edu/software/mendelims/ MendeLIMS]		! colspan="2"\| Product: [https://dna-discovery.stanford.edu/research/software/mendelims/ MendeLIMS]
	\|-		\|-
	\| style="background-color:white; border-style:none;"\| {{Databox LIMSfeature		\| style="background-color:white; border-style:none;"\| {{Databox LIMSfeature
	\| sample_login_man = Y<ref name="MLUser">{{cite web \|url=http://dna-discovery.stanford.edu/~~software~~/~~mendelims~~/MendeLIMS_UserGuide.pdf \|format=PDF \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide \|publisher=Stanford University School of Medicine \|date=03 June 2013 \|accessdate=~~22 May 2014~~}}</ref>		\| sample_login_man = Y<ref name="MLUser">{{cite web \|url=http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf \|format=PDF \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide \|publisher=Stanford University School of Medicine \|date=03 June 2013 \|accessdate=23 October 2019}}</ref>
	\| sample_track = Y<ref name="MLUser" />		\| sample_track = Y<ref name="MLUser" />
	\| sample_batch = Y<ref name="MLUser" />		\| sample_batch = Y<ref name="MLUser" />
Line 136:		Line 136:

	====Pricing====		====Pricing====

	The software is free to download and use.		The software is free to download and use.

	====Additional information====		====Additional information====

	* [http://dna-discovery.stanford.edu/~~software~~/~~mendelims~~/MendeLIMS_UserGuide.pdf MendeLIMS user guide]		* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
	* [http://dna-discovery.stanford.edu/~~software~~/~~mendelims~~/MendeLIMS_Install.pdf MendeLIMS installation guide]		* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide]
	* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)		* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
	* [http://mendelims.stanford.edu/ MendeLIMS demo site]		* [http://mendelims.stanford.edu/ MendeLIMS demo site]
	* [~~http~~://dna-discovery.stanford.edu/software/~~index.html~~ Software from Ji Research Group]		* [https://dna-discovery.stanford.edu/research/software/ Software from Ji Research Group]

	==References==		==References==

Shawndouglas: Cats

2017-09-13T21:04:35Z

Cats

← Older revision		Revision as of 21:04, 13 September 2017
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	\| usage_cost =		\| usage_cost =

	\| industries = biotechnology, life sciences		\| industries = biotechnology, high-throughput sequencing, life sciences
	}}		}}
	\|-		\|-
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:Biotechnology LIMS]]		[[Category:Biotechnology LIMS]]
			[[Category:High-throughput sequencing LIMS]]
	[[Category:Life sciences LIMS]]		[[Category:Life sciences LIMS]]
	[[Category:LIMS vendor]]		[[Category:LIMS vendor]]
	[[Category:Vendors]]		[[Category:Vendors]]

Shawndouglas: /* MendeLIMS */ Added cite

2016-08-29T22:01:17Z

MendeLIMS: Added cite

← Older revision		Revision as of 22:01, 29 August 2016
Line 50:		Line 50:
	===MendeLIMS===		===MendeLIMS===

	MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology. The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web \|url=http://dna-discovery.stanford.edu/software/index.html \|title=Ji Research Group - Software \|publisher=Stanford University School of Medicine \|accessdate=22 May 2014}}</ref> The software is free to download and use.		MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing \|journal=BMC Bioinformatics \|author=Grimes, Susan M.; Ji, Hanlee P. \|volume=15 \|pages=290 \|year=2014 \|doi=10.1186/1471-2105-15-290 \|pmid=25159034 \|pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web \|url=http://dna-discovery.stanford.edu/software/index.html \|title=Ji Research Group - Software \|publisher=Stanford University School of Medicine \|accessdate=22 May 2014}}</ref> The software is free to download and use.

	For all sequencing-related software, see the research group's [http://dna-discovery.stanford.edu/software/index.html web page].		For all sequencing-related software, see the research group's [http://dna-discovery.stanford.edu/software/index.html web page].

Shawndouglas: Added LI to infobox

2016-06-27T20:27:23Z

Added LI to infobox

← Older revision		Revision as of 20:27, 27 June 2016
Line 13:		Line 13:
	\|founder =		\|founder =
	\|defunct =		\|defunct =
	\|location_city = 291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor, Dean's Office, MC 5216, Stanford, California		\|location_city = 291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor<br />Dean's Office, MC 5216, Stanford, California
	\|location_country = U.S.		\|location_country = U.S.
	\|locations =		\|locations =
Line 36:		Line 36:
	\|subsid =		\|subsid =
	\|homepage = [http://med.stanford.edu/ med.stanford.edu]		\|homepage = [http://med.stanford.edu/ med.stanford.edu]
			\|linkedin = [https://www.linkedin.com/company/1790 https://www.linkedin.com/company/1790]
	\|footnotes =		\|footnotes =
	\|intl = No		\|intl = No

Shawndouglas: /* Additional information */ Added item

2014-05-22T18:30:01Z

Additional information: Added item

← Older revision		Revision as of 18:30, 22 May 2014
Line 143:		Line 143:
	* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_Install.pdf MendeLIMS installation guide]		* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_Install.pdf MendeLIMS installation guide]
	* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)		* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
			* [http://mendelims.stanford.edu/ MendeLIMS demo site]
	* [http://dna-discovery.stanford.edu/software/index.html Software from Ji Research Group]		* [http://dna-discovery.stanford.edu/software/index.html Software from Ji Research Group]

Shawndouglas: Created as needed.

2014-05-22T16:26:19Z

Created as needed.

New page

{{Infobox company
|company_name = '''Stanford University School of Medicine'''
|company_logo =
|company_type =
|traded_as =
|industry = Education
|genre =
|fate =
|predecessor =
|successor =
|company_slogan =
|foundation =
|founder =
|defunct =
|location_city = 291 Campus Drive, Rm LK3C02, Li Ka Shing Building, 3rd floor, Dean's Office, MC 5216, Stanford, California
|location_country = U.S.
|locations =
|area_served = U.S.
|key_people =
|products = {{Collapsible list
|framestyle=border:none; padding:0;
|title=<small>Products list</small>
|1=<li>MendeLIMS}}
|production =
|service =
|revenue =
|operating_income =
|net_income =
|aum =
|assets =
|equity =
|owner =
|num_employees =
|parent = Stanford University
|divisions = [http://med.stanford.edu/departments/ Various]
|subsid =
|homepage = [http://med.stanford.edu/ med.stanford.edu]
|footnotes =
|intl = No
}}
'''Stanford University School of Medicine''' is one of the oldest medical schools in the United States.

==History==

==Technology and products==

===MendeLIMS===

MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology. The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web |url=http://dna-discovery.stanford.edu/software/index.html |title=Ji Research Group - Software |publisher=Stanford University School of Medicine |accessdate=22 May 2014}}</ref> The software is free to download and use.

For all sequencing-related software, see the research group's [http://dna-discovery.stanford.edu/software/index.html web page].

====Features====

{{Ombox productfeature}}

{| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"
|-
! colspan="2"| Product: [http://dna-discovery.stanford.edu/software/mendelims/ MendeLIMS]
|-
| style="background-color:white; border-style:none;"| {{Databox LIMSfeature
| sample_login_man = Y<ref name="MLUser">{{cite web |url=http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_UserGuide.pdf |format=PDF |title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide |publisher=Stanford University School of Medicine |date=03 June 2013 |accessdate=22 May 2014}}</ref>
| sample_track = Y<ref name="MLUser" />
| sample_batch = Y<ref name="MLUser" />
| task_event_sched =
| manual_entry = Y<ref name="MLUser" />
| multiple_view = Y<ref name="MLUser" />
| data_analysis =
| data_sharing =
| custom_fields =
| query = Y<ref name="MLUser" />
| import_data =
| data_linking_int =
| data_linking_ext =
| eln_support =
| export_msexcel =
| export_raw =
| data_warehouse =
| deadline_control =
| production_control =
| project_task_man = Y<ref name="MLUser" />
| inventory_man =
| document_man =
| case_man =
| workflow_man =
| spec_man =
| customer_man = Y<ref name="MLUser" />
| billing_man =

| reg_compliance =
| qa_qc =
| performance_eval =
| audit_trail =
| chain_custody =
| roles_security = Y<ref name="MLUser" />
| data_norm =
| data_val =
| data_encrypt =
| version_control =
| data_backup =
| enviro_monitoring =

| custom_reporting = Y<ref name="MLUser" />
| report_printing =
| label_support =
| barcode_support = Y<ref name="MLUser" />
| export_pdf =
| export_msword =
| export_htmlxml =
| fax_integration =
| email_integration =

| admin_manage = Y<ref name="MLUser" />
| modular =
| instrument_inter =
| mobile_device =
| alarms_alerts =
| work_timetrack =
| voice_rec =
| external_monitor =
| messaging =
| multilingual =
| network =
| web_client = Y<ref name="MLUser" />
| online_help =
| saas_model =
| usage_cost =

| industries = biotechnology, life sciences
}}
|-
|}

====Pricing====

The software is free to download and use.

====Additional information====

* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
* [http://dna-discovery.stanford.edu/software/mendelims/MendeLIMS_Install.pdf MendeLIMS installation guide]
* [https://github.com/sgtc-stanford/mendeLIMS MendeLIMS download location] (reading installation guide recommended)
* [http://dna-discovery.stanford.edu/software/index.html Software from Ji Research Group]

==References==
<references/>


[[Category:Biotechnology LIMS]]
[[Category:Life sciences LIMS]]
[[Category:LIMS vendor]]
[[Category:Vendors]]

← Older revision		Revision as of 15:14, 29 May 2024
Line 47:		Line 47:

	==Technology and products==		==Technology and products==

	===MendeLIMS===		===MendeLIMS===

	MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing \|journal=BMC Bioinformatics \|author=Grimes, Susan M.; Ji, Hanlee P. \|volume=15 \|pages=290 \|year=2014 \|doi=10.1186/1471-2105-15-290 \|pmid=25159034 \|pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web \|url=https://dna-discovery.stanford.edu/research/software/ \|title=Ji Research Group - Software \|publisher=Stanford University School of Medicine \|accessdate=23 October 2019}}</ref> The software is free to download and use.		MendeLIMS is a [[laboratory information management system]] (LIMS) developed by the medical school's Ji Research Group in the Division of Oncology.<ref name="GrimesMende14">{{cite journal \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing \|journal=BMC Bioinformatics \|author=Grimes, Susan M.; Ji, Hanlee P. \|volume=15 \|pages=290 \|year=2014 \|doi=10.1186/1471-2105-15-290 \|pmid=25159034 \|pmc=PMC4155081}}</ref> The LIMS was designed to aid those conducting "[l]arge clinical genomics studies [that] require the ability to select and track samples from a large population of patients through the various experimental steps involved in genome sequencing."<ref name="JRGSoft">{{cite web \|url=https://dna-discovery.stanford.edu/research/software/ \|title=Ji Research Group - Software \|publisher=Stanford University School of Medicine \|accessdate=23 October 2019}}</ref> The software is free to download and use.

	For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page].		For all sequencing-related software, see the research group's [https://dna-discovery.stanford.edu/research/software/ web page].

	====~~Features~~====		====Pricing====
			The software is free to download and use.
	~~{{Ombox productfeature}}~~

	~~{\| class="wikitable collapsible" style="border-style:none;" background="#ffffff" border="0" cellpadding="0" cellspacing="0"~~
	\|-
	~~! colspan="2"\| Product: [https://dna-discovery.stanford.edu/research/~~software~~/mendelims/ MendeLIMS]~~
	\|-
	~~\| style="background-color:white; border-style:none;"\| {{Databox LIMSfeature~~
	~~\| sample_login_man = Y<ref name="MLUser">{{cite web \|url=https://dna-discovery.stanford~~.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf \|format=PDF \|title=MendeLIMS: A web-based laboratory information management system for clinical genome sequencing - User Guide \|publisher=Stanford University School of Medicine \|date=03 June 2013 \|accessdate=08 October 2021}}</ref>
	~~\| sample_track = Y<ref name="MLUser" />~~
	~~\| sample_batch = Y<ref name="MLUser" />~~
	~~\| task_event_sched =~~
	~~\| manual_entry = Y<ref name="MLUser" />~~
	~~\| multiple_view = Y<ref name="MLUser" />~~
	~~\| data_analysis =~~
	~~\| data_sharing =~~
	~~\| custom_fields =~~
	~~\| query = Y<ref name="MLUser" />~~
	~~\| import_data =~~
	~~\| data_linking_int =~~
	~~\| data_linking_ext =~~
	~~\| eln_support =~~
	~~\| export_msexcel =~~
	~~\| export_raw =~~
	~~\| data_warehouse =~~
	~~\| deadline_control =~~
	~~\| production_control =~~
	~~\| project_task_man = Y<ref name="MLUser" />~~
	~~\| inventory_man =~~
	~~\| document_man =~~
	~~\| case_man =~~
	~~\| workflow_man =~~
	~~\| spec_man =~~
	~~\| customer_man = Y<ref name="MLUser" />~~
	~~\| billing_man =~~

	~~\| reg_compliance =~~
	~~\| qa_qc =~~
	~~\| performance_eval =~~
	~~\| audit_trail =~~
	~~\| chain_custody =~~
	~~\| roles_security = Y<ref name="MLUser" />~~
	~~\| data_norm =~~
	~~\| data_val =~~
	~~\| data_encrypt =~~
	~~\| version_control =~~
	~~\| data_backup =~~
	~~\| enviro_monitoring =~~

	~~\| custom_reporting = Y<ref name="MLUser" />~~
	~~\| report_printing =~~
	~~\| label_support =~~
	~~\| barcode_support = Y<ref name="MLUser" />~~
	~~\| export_pdf =~~
	~~\| export_msword =~~
	~~\| export_htmlxml =~~
	~~\| fax_integration =~~
	~~\| email_integration =~~

	~~\| admin_manage = Y<ref name="MLUser" />~~
	~~\| modular =~~
	~~\| instrument_inter =~~
	~~\| mobile_device =~~
	~~\| alarms_alerts =~~
	~~\| work_timetrack =~~
	~~\| voice_rec =~~
	~~\| external_monitor =~~
	~~\| messaging =~~
	~~\| multilingual =~~
	~~\| network =~~
	~~\| web_client = Y<ref name="MLUser" />~~
	~~\| online_help =~~
	~~\| saas_model =~~
	~~\| usage_cost =~~

	~~\| industries~~ = ~~high-throughput sequencing~~		====Demonstration videos and other media====
	}}
	\|-
	\|}

	~~====Pricing====~~
	~~The software is free to download and use.~~

	====Additional information====		====Additional information====

	* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide]		* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_UserGuide.pdf MendeLIMS user guide]
	* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide]		* [http://dna-discovery.stanford.edu/wp-content/uploads/2018/05/MendeLIMS_Install.pdf MendeLIMS installation guide]