ProtLIMS - Revision history

Shawndouglas: /* References */

2021-05-04T16:45:29Z

References

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	~~[[Category:Laboratory informatics software (open source)]]~~
	~~[[Category:Laboratory information management systems~~ (open source)]]

Shawndouglas: /* References */ Added cat

2014-09-03T20:15:23Z

References: Added cat

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			[[Category:Discontinued or abandoned software (open source)‎]]
	[[Category:Laboratory informatics software (open source)]]		[[Category:Laboratory informatics software (open source)]]
	[[Category:Laboratory information management systems (open source)]]		[[Category:Laboratory information management systems (open source)]]

Shawndouglas: /* Product history */ Grammar

2013-10-03T19:00:48Z

Product history: Grammar

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	==Product history==		==Product history==

	The Bioinformatics Facility at Fox Chase Cancer Center (FCCC) initiated development of protLIMS in early-2006 under the [[National Cancer Institute]]'s Cancer Biomedical Informatics Grid [[caBIG]] initiative.<ref name="ELN">{{cite journal \|url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/ \|title=Proteomics LIMS: A caBIG Project, Year 1 \|journal=AMIA Annual Symposium Proceedings 2006 \|author=Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas \|pages=1116 \|year=2006 \|pmc=PMC1839438 \|accessdate=30 January 2013}}</ref> The goal of the project was "to develop a stand-alone LIMS system dedicated to studies in the realm of [[proteomics]]" and "to capture the data and metadata to the point in the analytical workflow where sample are prepared for mass spectroscopy."<ref name="protSpecDoc">{{cite web \|url=http://gforge.nci.nih.gov/docman/view.php/98/1974/caBIG_SRSD_ProtLIMS_2_1.doc \|title=Software Requirements and Specification Document: caBIG Proteomics LIMS \|publisher=[[National Cancer Institute]] \|date=February 2006 \|page=1 \|format=DOC \|accessdate=30 January 2013}}</ref> Version 1.0 of the software was released on April 4, 2006, followed by 1.1 on May 19.<ref name="ELN46" /> No further public releases or discussion were made on neither the NCI site or the FCCC site, and the project is assumed to be dead.		The Bioinformatics Facility at Fox Chase Cancer Center (FCCC) initiated development of protLIMS in early 2006 under the [[National Cancer Institute]]'s Cancer Biomedical Informatics Grid [[caBIG]] initiative.<ref name="ELN">{{cite journal \|url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/ \|title=Proteomics LIMS: A caBIG Project, Year 1 \|journal=AMIA Annual Symposium Proceedings 2006 \|author=Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas \|pages=1116 \|year=2006 \|pmc=PMC1839438 \|accessdate=30 January 2013}}</ref> The goal of the project was "to develop a stand-alone LIMS system dedicated to studies in the realm of [[proteomics]]" and "to capture the data and metadata to the point in the analytical workflow where sample are prepared for mass spectroscopy."<ref name="protSpecDoc">{{cite web \|url=http://gforge.nci.nih.gov/docman/view.php/98/1974/caBIG_SRSD_ProtLIMS_2_1.doc \|title=Software Requirements and Specification Document: caBIG Proteomics LIMS \|publisher=[[National Cancer Institute]] \|date=February 2006 \|page=1 \|format=DOC \|accessdate=30 January 2013}}</ref> Version 1.0 of the software was released on April 4, 2006, followed by 1.1 on May 19.<ref name="ELN46" /> No further public releases or discussion were made on neither the NCI site or the FCCC site, and the project is assumed to be dead.

	==Features==		==Features==

Shawndouglas: Added content.

2013-01-31T00:52:53Z

Added content.

← Older revision		Revision as of 00:52, 31 January 2013
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	==Product history==		==Product history==

	The Bioinformatics Facility at Fox Chase Cancer Center initiated development of protLIMS in early-2006 under the [[National Cancer Institute]]'s Cancer Biomedical Informatics Grid [[caBIG]] initiative.<ref name="ELN">{{cite journal \|url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/ \|title=Proteomics LIMS: A caBIG Project, Year 1 \|journal=AMIA Annual Symposium Proceedings 2006 \|author=Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas \|pages=1116 \|year=2006 \|pmc=PMC1839438 \|accessdate=30 January 2013}}</ref> The goal of the project was "to develop a stand-alone LIMS system dedicated to studies in the realm of [[proteomics]]" and "to capture the data and metadata to the point in the analytical workflow where sample are prepared for mass spectroscopy."<ref name="protSpecDoc">{{cite web \|url=http://gforge.nci.nih.gov/docman/view.php/98/1974/caBIG_SRSD_ProtLIMS_2_1.doc \|title=Software Requirements and Specification Document: caBIG Proteomics LIMS \|publisher=[[National Cancer Institute]] \|date=February 2006 \|page=1 \|format=DOC \|accessdate=30 January 2013}}</ref>		The Bioinformatics Facility at Fox Chase Cancer Center (FCCC) initiated development of protLIMS in early-2006 under the [[National Cancer Institute]]'s Cancer Biomedical Informatics Grid [[caBIG]] initiative.<ref name="ELN">{{cite journal \|url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/ \|title=Proteomics LIMS: A caBIG Project, Year 1 \|journal=AMIA Annual Symposium Proceedings 2006 \|author=Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas \|pages=1116 \|year=2006 \|pmc=PMC1839438 \|accessdate=30 January 2013}}</ref> The goal of the project was "to develop a stand-alone LIMS system dedicated to studies in the realm of [[proteomics]]" and "to capture the data and metadata to the point in the analytical workflow where sample are prepared for mass spectroscopy."<ref name="protSpecDoc">{{cite web \|url=http://gforge.nci.nih.gov/docman/view.php/98/1974/caBIG_SRSD_ProtLIMS_2_1.doc \|title=Software Requirements and Specification Document: caBIG Proteomics LIMS \|publisher=[[National Cancer Institute]] \|date=February 2006 \|page=1 \|format=DOC \|accessdate=30 January 2013}}</ref> Version 1.0 of the software was released on April 4, 2006, followed by 1.1 on May 19.<ref name="ELN46" /> No further public releases or discussion were made on neither the NCI site or the FCCC site, and the project is assumed to be dead.

	==Features==		==Features==

	The main features of protLIMS ~~include~~:		The main features of protLIMS can more or less be deduced from [http://gforge.nci.nih.gov/docman/index.php?group_id=98&selected_doc_group_id=3035&language_id=1 the user guide]. The software is described as '''not''' being [[Health Insurance Portability and Accountability Act\|HIPAA]] compliant.

	*

	==Hardware/software requirements==		==Hardware/software requirements==
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	Installation requirements for protLIMS include:		Installation requirements for protLIMS include:

	*		* Java 1.4.2
			* the included JBOSS 4.0.0

			Consult the [http://gforge.nci.nih.gov/docman/index.php?group_id=98&selected_doc_group_id=3035&language_id=1 user documentation] for more information.

	==Videos, screenshots, and other media==		==Videos, screenshots, and other media==

	* Tutorial videos for protLIMS can be found on the [http://collaboratory.emsl.pnl.gov/help/movies/index.shtml PNNL site].		* Documentation for protLIMS is located [http://gforge.nci.nih.gov/docman/index.php?group_id=98&selected_doc_group_id=3035&language_id=1 here].
	* Documentation for protLIMS is located [http://~~collaboratory~~.~~emsl~~.~~pnl~~.gov/~~help~~/~~eln/instructions~~.~~shtml~~ here].

	==Entities using protLIMS==		==Entities using protLIMS==

Shawndouglas: Created stub. Need to add more history.

2013-01-31T00:43:52Z

Created stub. Need to add more history.

New page

{{lowercase title}}
{{Infobox software
| name = protLIMS
| title = '''protLIMS'''
| logo = 
| screenshot = 
| caption =
| collapsible =
| author = Joseph Hanauer, Olga Tchuvatkina, and Thomas Moloshok
| developer = Fox Chase Cancer Center
| released = {{Start date|2006|04|04}} (1.0)<ref name="ELN46">{{cite web |url=http://gforge.nci.nih.gov/frs/?group_id=98 |title=protLIMS: Project Filelist |publisher=[[National Cancer Institute]] |accessdate=30 January 2013}}</ref>
| latest release version = 1.1
| latest release date = {{Start date and age|2006|05|19}}
| discontinued = yes
| programming language = Java
| operating system = Cross-platform
| platform =
| size =
| language = English
| status =
| genre = Laboratory informatics software<br />Laboratory information management systems
| license = Unknown
| website = [http://gforge.nci.nih.gov/projects/protlims/ gforge.nci.nih.gov]
}}

'''protLIMS''' was a free open-source [[caBIG]]-compliant [[laboratory information management system]] designed for the field of [[proteomics]]. Only two public releases of the software were made in 2006, with no updates since.

==Product history==

The Bioinformatics Facility at Fox Chase Cancer Center initiated development of protLIMS in early-2006 under the [[National Cancer Institute]]'s Cancer Biomedical Informatics Grid [[caBIG]] initiative.<ref name="ELN">{{cite journal |url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/ |title=Proteomics LIMS: A caBIG Project, Year 1 |journal=AMIA Annual Symposium Proceedings 2006 |author=Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas |pages=1116 |year=2006 |pmc=PMC1839438 |accessdate=30 January 2013}}</ref> The goal of the project was "to develop a stand-alone LIMS system dedicated to studies in the realm of [[proteomics]]" and "to capture the data and metadata to the point in the analytical workflow where sample are prepared for mass spectroscopy."<ref name="protSpecDoc">{{cite web |url=http://gforge.nci.nih.gov/docman/view.php/98/1974/caBIG_SRSD_ProtLIMS_2_1.doc |title=Software Requirements and Specification Document: caBIG Proteomics LIMS |publisher=[[National Cancer Institute]] |date=February 2006 |page=1 |format=DOC |accessdate=30 January 2013}}</ref>

==Features==

The main features of protLIMS include:

*

==Hardware/software requirements==

Installation requirements for protLIMS include:

*

==Videos, screenshots, and other media==

* Tutorial videos for protLIMS can be found on the [http://collaboratory.emsl.pnl.gov/help/movies/index.shtml PNNL site].
* Documentation for protLIMS is located [http://collaboratory.emsl.pnl.gov/help/eln/instructions.shtml here].

==Entities using protLIMS==

==Further reading==

* {{cite journal |url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839438/ |title=Proteomics LIMS: A caBIG Project, Year 1 |journal=AMIA Annual Symposium Proceedings 2006 |author=Tchuvatkina, Olga; Shimoni, Liat; Ochs, Michael F.; Moloshok, Thomas |pages=1116 |year=2006 |pmc=PMC1839438}}

==External links==

* [http://bioinformatics.fccc.edu/software/caBIG/protLIMS/protlims.shtml protLIMS at Fox Chase Cancer Center]

==References==
<references />


[[Category:Laboratory informatics software (open source)]]
[[Category:Laboratory information management systems (open source)]]