PiMS - Revision history

Shawndouglas: /* References */

2021-05-04T16:44:38Z

References

← Older revision		Revision as of 16:44, 4 May 2021
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:Discontinued or abandoned software (open source)]]		[[Category:Discontinued or abandoned software (open source)]]
	~~[[Category:Laboratory informatics software (open source)]]~~
	~~[[Category:Laboratory information management systems (open source)]]~~

Shawndouglas: /* Further reading */ Updated ref

2016-01-21T17:32:23Z

Shawndouglas: Updated.

2015-05-05T17:22:11Z

Updated.

← Older revision		Revision as of 17:22, 5 May 2015
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	\| developer = [http://pims.structuralbiology.eu/docs/participantsPiMS.html PiMS development team]		\| developer = [http://pims.structuralbiology.eu/docs/participantsPiMS.html PiMS development team]
	\| released = {{Start date\|2006\|11\|02}}<ref name="PiMS10">{{cite web \|url=http://pims.structuralbiology.eu/docs/changes/V1_0_0.html \|title=PiMS Defect Tracker - Issue Navigator \|publisher=Computational Centre for Integrated Structural Biology \|date=12 January 2007 \|accessdate=25 September 2013}}</ref>		\| released = {{Start date\|2006\|11\|02}}<ref name="PiMS10">{{cite web \|url=http://pims.structuralbiology.eu/docs/changes/V1_0_0.html \|title=PiMS Defect Tracker - Issue Navigator \|publisher=Computational Centre for Integrated Structural Biology \|date=12 January 2007 \|accessdate=25 September 2013}}</ref>
	\| discontinued =		\| discontinued = yes
	\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->		\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
	\| programming language = Java		\| programming language = Java
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	}}		}}

	'''PiMS''' is a free [[laboratory information management system]] (LIMS) solution that "enables researchers to enter data, track samples and report results during the production of recombinant proteins for structural and functional applications."<ref name="PLAbout">{{cite web \|url=http://pims.structuralbiology.eu/docs/aboutPiMS.html \|title=PiMS Community Model \|publisher=Computational Centre for Integrated Structural Biology \|accessdate=25 September 2013}}</ref> The free version is meant for academic use, though a commercial version of the software is also available.		'''PiMS''' was a free [[laboratory information management system]] (LIMS) solution that "enables researchers to enter data, track samples and report results during the production of recombinant proteins for structural and functional applications."<ref name="PLAbout">{{cite web \|url=http://pims.structuralbiology.eu/docs/aboutPiMS.html \|title=PiMS Community Model \|publisher=Computational Centre for Integrated Structural Biology \|accessdate=25 September 2013}}</ref> The free version was meant for academic use, though a commercial version of the software was also available.

	==Product history==		==Product history==
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	==Features==		==Features==

	Features ~~include~~:		Features included:

	* sample management and tracking		* sample management and tracking
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	==Hardware/software requirements==		==Hardware/software requirements==

	The installation requirements ~~aren~~'t clear.		The installation requirements weren't clear.

	To download and install a free version for academic use, see [http://pims.structuralbiology.eu/docs/downloadPiMS.html the download page] for more information.		To download and install a free version for academic use, see [http://pims.structuralbiology.eu/docs/downloadPiMS.html the download page] for more information.
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	<!---Place all category tags here-->		<!---Place all category tags here-->
			[[Category:Discontinued or abandoned software (open source)]]
	[[Category:Laboratory informatics software (open source)]]		[[Category:Laboratory informatics software (open source)]]
	[[Category:Laboratory information management systems (open source)]]		[[Category:Laboratory information management systems (open source)]]

Shawndouglas: /* Product history */ Added history

2015-05-05T17:19:13Z

Product history: Added history

← Older revision		Revision as of 17:19, 5 May 2015
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	On December 3, 2012, the PiMS Project Steering Board announced a commercial version of the software, PiMS Pro, would become available through partner Emerald Bio.<ref name="PiMSPro">{{cite web \|url=http://www.structuralbiology.eu/support/whats-on/news/pims-protm-available-commercial-use \|title=PiMS Pro(TM) available for commercial use \|publisher=The University of Oxford \|date=03 December 2012 \|accessdate=25 September 2013}}</ref>		On December 3, 2012, the PiMS Project Steering Board announced a commercial version of the software, PiMS Pro, would become available through partner Emerald Bio.<ref name="PiMSPro">{{cite web \|url=http://www.structuralbiology.eu/support/whats-on/news/pims-protm-available-commercial-use \|title=PiMS Pro(TM) available for commercial use \|publisher=The University of Oxford \|date=03 December 2012 \|accessdate=25 September 2013}}</ref>

			The PiMS development team ended support for the software on March 30, 2015, and development is assumed to be dead.<ref name="PiMSDlArch">{{cite web \|url=http://pims.structuralbiology.eu/docs/downloadPiMS.html \|archiveurl=https://web.archive.org/web/20150505171630/http://pims.structuralbiology.eu/docs/downloadPiMS.html \|title=Download PiMS \|publisher=Computational Centre for Integrated Structural Biology \|archivedate=05 May 2015 \|accessdate=05 May 2015}}</ref>

	==Features==		==Features==

Shawndouglas: /* Hardware/software requirements */ Grammar.

2013-09-26T00:25:47Z

Hardware/software requirements: Grammar.

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	==Hardware/software requirements==		==Hardware/software requirements==

	~~Requirements~~ aren't clear.		The installation requirements aren't clear.

	To download and install a free version for academic use, see [http://pims.structuralbiology.eu/docs/downloadPiMS.html the download page] for more information.		To download and install a free version for academic use, see [http://pims.structuralbiology.eu/docs/downloadPiMS.html the download page] for more information.

Shawndouglas: Updated further reading.

2013-09-26T00:25:17Z

Updated further reading.

← Older revision		Revision as of 00:25, 26 September 2013
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	* {{cite journal \|url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/ \|title=Recording information on protein complexes in an information management system \|journal=Journal of Structural Biology \|author=Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. \|date=August 2011 \|volume=175 \|issue=2-2 \|pages=224–229 \|doi=10.1016/j.jsb.2011.05.009}}		* {{cite journal \|url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/ \|title=Recording information on protein complexes in an information management system \|journal=Journal of Structural Biology \|author=Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. \|date=August 2011 \|volume=175 \|issue=2-2 \|pages=224–229 \|doi=10.1016/j.jsb.2011.05.009}}

	* {{cite journal \|url=http://~~www~~.~~ncbi~~.~~nlm.nih.gov~~/~~pmc/articles/PMC3477311~~/ \|title=~~Recording information on protein complexes in an information management system~~ \|journal=~~Journal of Structural Biology~~ \|author=~~Savitsky~~, ~~Marc~~; ~~Diprose~~, ~~Jonathan M~~.~~; Morris, Chris~~; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; ~~Daenke~~, ~~Susan~~; ~~Bishop~~, ~~Benjamin~~; ~~Siebold~~, ~~Christian~~; ~~Wilson~~, ~~Keith S~~.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. \|date=~~August~~ 2011 \|volume=~~175~~ \|issue=~~2-2~~ \|pages=~~224–229~~ \|doi=10.~~1016~~/~~j.jsb.2011.05.009~~}}		* {{cite journal \|url=http://scripts.iucr.org/cgi-bin/paper?S0907444911007943 \|title=The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory \|journal=Acta Crystallographica Section D \|author=Morris, Chris; Pajon, A.; Griffiths, Susanne L.; Daniel, Edward; Savitsky, Marc; Lin, Bill; Diprose, Jonathan M.; Wilter da Silva, A.; Pilicheva, K.; Troshin, P.; van Niekerk, J.; Isaacs, N.; Naismith, J.; Nave, C.; Blake, Richard; Wilson, Keith S.; Stuart, David I.; Henrick, K.; Esnouf, Robert M. \|date=April 2011 \|volume=67 \|issue=4 \|pages=249–260 \|doi=10.1107/S0907444911007943}}

	==External links==		==External links==

Shawndouglas: Created as needed.

2013-09-26T00:16:08Z

Created as needed.

New page

{{Infobox software
| name = PiMS
| title = PiMS
| logo = [[Image:PiMS_logo.gif‎]]
| screenshot = 
| caption =
| collapsible =
| author =
| developer = [http://pims.structuralbiology.eu/docs/participantsPiMS.html PiMS development team]
| released = {{Start date|2006|11|02}}<ref name="PiMS10">{{cite web |url=http://pims.structuralbiology.eu/docs/changes/V1_0_0.html |title=PiMS Defect Tracker - Issue Navigator |publisher=Computational Centre for Integrated Structural Biology |date=12 January 2007 |accessdate=25 September 2013}}</ref>
| discontinued =
| frequently updated = yes
| programming language = Java
| operating system = Cross-platform
| platform =
| size =
| language =
| status =
| genre = [[Laboratory informatics]] software
| license = [http://pims.structuralbiology.eu/docs/community%20model%20pimsacademicuseronly%20FINAL.docx Proprietary academic license] (Word doc)
| website = [http://www.pims-lims.org/ PiMS-LIMS.org]
}}

'''PiMS''' is a free [[laboratory information management system]] (LIMS) solution that "enables researchers to enter data, track samples and report results during the production of recombinant proteins for structural and functional applications."<ref name="PLAbout">{{cite web |url=http://pims.structuralbiology.eu/docs/aboutPiMS.html |title=PiMS Community Model |publisher=Computational Centre for Integrated Structural Biology |accessdate=25 September 2013}}</ref> The free version is meant for academic use, though a commercial version of the software is also available.

==Product history==

PiMS funding came from the BBSRC SPoRT consortia of the Scottish Structural Proteomics Facility (SSPF) and the Membrane Protein Structure Initiative (MPSI), starting in January 2005.<ref name="PiMSHist">{{cite web |url=http://pims.structuralbiology.eu/docs/about.html |title=What is PiMS? |publisher=Computational Centre for Integrated Structural Biology |accessdate=25 September 2013}}</ref><ref name="PiMSTalk">{{cite web |url=http://www.ebi.ac.uk/pdbe/docs/embo08/talks/EMBOpims.ppt |format=PPT |title=Data Management and Protein Production – from Lab Notebooks to LIMS |author=Esnouf, Robert |publisher=Oxford Protein Production Facility |date=23 September 2008 |accessdate=25 September 2013}}</ref> A working version 1.0 of the software was released was released on November 2, 2006.<ref name="PiMS10" /> Version 2.0 of the software arrived exactly a year later, with 3.0 releasing on July 8, 2008 and version 4.0 on January 1, 2010.<ref name="PiMSChanges">{{cite web |url=http://pims.structuralbiology.eu/docs/changes/ |title=/frontpage/changes |publisher=Computational Centre for Integrated Structural Biology |accessdate=25 September 2013}}</ref>

On December 3, 2012, the PiMS Project Steering Board announced a commercial version of the software, PiMS Pro, would become available through partner Emerald Bio.<ref name="PiMSPro">{{cite web |url=http://www.structuralbiology.eu/support/whats-on/news/pims-protm-available-commercial-use |title=PiMS Pro(TM) available for commercial use |publisher=The University of Oxford |date=03 December 2012 |accessdate=25 September 2013}}</ref>

==Features==

Features include:

* sample management and tracking
* experiment and project management
* query tools
* workflow management
* web-based
* results recording and analysis
* reporting
* inventory management
* document management

==Hardware/software requirements==

Requirements aren't clear.

To download and install a free version for academic use, see [http://pims.structuralbiology.eu/docs/downloadPiMS.html the download page] for more information.

==Videos, screenshots, and other media==

* [http://vimeo.com/16469156 Demo video of PiMS]
* [http://pims.structuralbiology.eu:8080/pims/functions/Help.jsp PiMS online user guide]
* [http://pims.structuralbiology.eu/tutorials/V4_3/index.html PiMS online tutorial]

==Entities using PiMS==

==Further reading==

* {{cite journal |url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/ |title=Recording information on protein complexes in an information management system |journal=Journal of Structural Biology |author=Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. |date=August 2011 |volume=175 |issue=2-2 |pages=224–229 |doi=10.1016/j.jsb.2011.05.009}}

* {{cite journal |url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/ |title=Recording information on protein complexes in an information management system |journal=Journal of Structural Biology |author=Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. |date=August 2011 |volume=175 |issue=2-2 |pages=224–229 |doi=10.1016/j.jsb.2011.05.009}}

==External links==

==References==
<references />


[[Category:Laboratory informatics software (open source)]]
[[Category:Laboratory information management systems (open source)]]

← Older revision		Revision as of 17:32, 21 January 2016
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	* {{cite journal \|url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/ \|title=Recording information on protein complexes in an information management system \|journal=Journal of Structural Biology \|author=Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. \|date=August 2011 \|volume=175 \|issue=2-2 \|pages=224–229 \|doi=10.1016/j.jsb.2011.05.009}}		* {{cite journal \|url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3477311/ \|title=Recording information on protein complexes in an information management system \|journal=Journal of Structural Biology \|author=Savitsky, Marc; Diprose, Jonathan M.; Morris, Chris; Griffiths, Susanne L.; Daniel, Edward; Lin, Bill; Daenke, Susan; Bishop, Benjamin; Siebold, Christian; Wilson, Keith S.; Blake, Richard; Stuart, David I.; Esnouf, Robert M. \|date=August 2011 \|volume=175 \|issue=2-2 \|pages=224–229 \|doi=10.1016/j.jsb.2011.05.009}}

	* {{cite journal ~~\|url=http://scripts.iucr.org/cgi-bin/paper?S0907444911007943~~ \|title=The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory \|journal=Acta Crystallographica Section D \|author=Morris, Chris; Pajon, A.; Griffiths, Susanne L.; Daniel, Edward; Savitsky, Marc; Lin, Bill; Diprose, Jonathan M.; Wilter da Silva, A.; Pilicheva, K.; Troshin, P.; van Niekerk, J.; Isaacs, N.; Naismith, J.; Nave, C.; Blake, Richard; Wilson, Keith S.; Stuart, David I.; Henrick, K.; Esnouf, Robert M. ~~\|date=April 2011~~ \|volume=67 \|issue=4 \|pages=249–260 \|doi=10.1107/S0907444911007943}}		* {{cite journal \|title=The Protein Information Management System (PiMS): A generic tool for any structural biology research laboratory \|journal=Acta Crystallographica Section D \|author=Morris, Chris; Pajon, A.; Griffiths, Susanne L.; Daniel, Edward; Savitsky, Marc; Lin, Bill; Diprose, Jonathan M.; Wilter da Silva, A.; Pilicheva, K.; Troshin, P.; van Niekerk, J.; Isaacs, N.; Naismith, J.; Nave, C.; Blake, Richard; Wilson, Keith S.; Stuart, David I.; Henrick, K.; Esnouf, Robert M. \|volume=67 \|issue=4 \|pages=249–260 \|year=2011 \|doi=10.1107/S0907444911007943 \|pmid=21460443 \|pmc=PMC3069740}}

	==External links==		==External links==