OpenLabFramework - Revision history

Shawndouglas: Abandoned

2021-05-04T17:41:58Z

Abandoned

← Older revision		Revision as of 17:41, 4 May 2021
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	\| developer = Markus List and Jochen Thomas		\| developer = Markus List and Jochen Thomas
	\| released = {{Start date\|2010\|06\|21}} (0.1)<ref name="OLFStartArch">{{cite web \|archiveurl=https://web.archive.org/web/20100821221354/http://sourceforge.net/projects/openlaboratory/files \|url=http://sourceforge.net/projects/openlaboratory/files/ \|title=Open Laboratory Framework - Files \|publisher=SourceForge \|archivedate=21 August 2010 \|accessdate=25 January 2016}}</ref>		\| released = {{Start date\|2010\|06\|21}} (0.1)<ref name="OLFStartArch">{{cite web \|archiveurl=https://web.archive.org/web/20100821221354/http://sourceforge.net/projects/openlaboratory/files \|url=http://sourceforge.net/projects/openlaboratory/files/ \|title=Open Laboratory Framework - Files \|publisher=SourceForge \|archivedate=21 August 2010 \|accessdate=25 January 2016}}</ref>
	\| discontinued =		\| discontinued = Yes
	\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->		\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
	\| programming language = JavaScript, XML		\| programming language = JavaScript, XML
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	}}		}}

	'''OpenLabFramework''' (formerly '''Open Laboratory Framework''') is a web-based [[laboratory information management system]] (LIMS) front-~~end — with~~ additional [[electronic laboratory notebook]] (ELN) ~~capabilities — that provides~~ an extensible framework for better laboratory functionality.		'''OpenLabFramework''' (formerly '''Open Laboratory Framework''') was a web-based [[laboratory information management system]] (LIMS) front-end—with additional [[electronic laboratory notebook]] (ELN) capabilities—that provided an extensible framework for better laboratory functionality.

	==Product history==		==Product history==
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	<blockquote>There is, however, no dedicated LIMS for the management of large vector construct and cell line libraries. At our Lundbeck Foundation Center of Excellence in Nanomedicine (NanoCAN) at the University of Southern Denmark in Odense such large-scale libraries need to be handled efficiently ... This motivated us to develop a novel open-source LIMS platform: OpenLabFramework (OLF).</blockquote>		<blockquote>There is, however, no dedicated LIMS for the management of large vector construct and cell line libraries. At our Lundbeck Foundation Center of Excellence in Nanomedicine (NanoCAN) at the University of Southern Denmark in Odense such large-scale libraries need to be handled efficiently ... This motivated us to develop a novel open-source LIMS platform: OpenLabFramework (OLF).</blockquote>

	In the fall of 2015, List ''et al.'' published another paper describing a new add-on to OpenLabFramework called "OpenLabNotes." Citing the benefits of integrating a home-grown ELN into the LIMS platform, the group stated: "OpenLabNotes effectively closes the gap between research documentation and sample management, thus making OpenLabFramework more attractive for laboratories that seek to increase productivity through electronic data management."<ref name="ListOpenLabNotes15">{{cite journal \|title=OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework \|journal=Journal of Integrative Bioinformatics \|author=List, M.; Franz, M.; Tan, Q.; Mollenhauer, J.; Baumbach, J. \|volume=12 \|issue=3 \|pages=274 \|year=2015 \|doi=10.2390/biecoll-jib-2015-274 \|pmid=26673790}}</ref> OpenLabNotes was first introduced to the framework with version 1.3.0 in February 2015<ref name="OLF130">{{cite web \|url=https://github.com/NanoCAN/OpenLabFramework/releases/tag/v1.3.0 \|title=v.1.3.0 WAR file for server deployment \|author=List, M. \|publisher=GitHub, Inc \|date=25 February 2015 \|accessdate=21 July 2016}}</ref> and significantly improved with version 1.3.2 in May 2015.<ref name="OLF132">{{cite web \|url=https://github.com/NanoCAN/OpenLabFramework/releases/tag/v.1.3.2 \|title=v.1.3.2 WAR file for server deployment \|author=List, M. \|publisher=GitHub, Inc \|date=04 May 2015 \|accessdate=21 July 2016}}</ref>		In the fall of 2015, List ''et al.'' published another paper describing a new add-on to OpenLabFramework called "OpenLabNotes." Citing the benefits of integrating a home-grown ELN into the LIMS platform, the group stated: "OpenLabNotes effectively closes the gap between research documentation and sample management, thus making OpenLabFramework more attractive for laboratories that seek to increase productivity through electronic data management."<ref name="ListOpenLabNotes15">{{cite journal \|title=OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework \|journal=Journal of Integrative Bioinformatics \|author=List, M.; Franz, M.; Tan, Q.; Mollenhauer, J.; Baumbach, J. \|volume=12 \|issue=3 \|pages=274 \|year=2015 \|doi=10.2390/biecoll-jib-2015-274 \|pmid=26673790}}</ref> OpenLabNotes was first introduced to the framework with version 1.3.0 in February 2015<ref name="OLF130">{{cite web \|url=https://github.com/NanoCAN/OpenLabFramework/releases/tag/v1.3.0 \|title=v.1.3.0 WAR file for server deployment \|author=List, M. \|publisher=GitHub, Inc \|date=25 February 2015 \|accessdate=21 July 2016}}</ref> and significantly improved with version 1.3.2 in May 2015.<ref name="OLF132">{{cite web \|url=https://github.com/NanoCAN/OpenLabFramework/releases/tag/v.1.3.2 \|title=v.1.3.2 WAR file for server deployment \|author=List, M. \|publisher=GitHub, Inc \|date=04 May 2015 \|accessdate=21 July 2016}}</ref>

			As of May 2021, the demo site is no longer available, and updates haven't been made for over five years. The project is presumably abandoned.

	==Features==		==Features==
	Features of OpenLabFramework ~~include~~<ref name="OLFHomeArch" />:		Features of OpenLabFramework included<ref name="OLFHomeArch" />:

	* web-based front-end		* web-based front-end
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	==Hardware/software requirements==		==Hardware/software requirements==
	Installation requirements [https://github.com/NanoCAN/OpenLabFramework/wiki/Getting-Started ~~include~~]:		Installation requirements [https://github.com/NanoCAN/OpenLabFramework/wiki/Getting-Started included]:

	* Grails 2.5.3		* Grails 2.5.3
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	==Videos, screenshots, and other media==		==Videos, screenshots, and other media==
	* A demo of OpenLabFramework ~~can~~ be found at [http://www.nanocan.dk/openlabframework/demo http://www.nanocan.dk/openlabframework/demo]. (user: admin, password: demo0815)		* A demo of OpenLabFramework originally could be found at [http://www.nanocan.dk/openlabframework/demo http://www.nanocan.dk/openlabframework/demo]. (user: admin, password: demo0815)

	==Entities using OpenLabFramework==		==Entities using OpenLabFramework==
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:~~Bioinformatics~~ software ~~(open source)]]~~		[[Category:Discontinued or abandoned software (open source)]]
	~~[[Category:Electronic laboratory notebooks (open source)]]~~
	~~[[Category:Laboratory informatics software (open source)]]~~
	~~[[Category:Laboratory information management systems~~ (open source)]]

Shawndouglas: /* Hardware/software requirements */ Updated

2016-07-21T16:09:40Z

Hardware/software requirements: Updated

← Older revision		Revision as of 16:09, 21 July 2016
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	Installation requirements [https://github.com/NanoCAN/OpenLabFramework/wiki/Getting-Started include]:		Installation requirements [https://github.com/NanoCAN/OpenLabFramework/wiki/Getting-Started include]:

	* Grails 2.2.x		* Grails 2.5.3
	* a supported browser, including Chrome (31.0.1650.63) or Firefox (26.0)		* a supported browser, including Chrome (31.0.1650.63) or Firefox (26.0)

Shawndouglas: Updated due to ELN addition

2016-07-21T16:06:09Z

Updated due to ELN addition

← Older revision		Revision as of 16:06, 21 July 2016
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	}}		}}

	'''OpenLabFramework''' (formerly '''Open Laboratory Framework''') is a web-based [[laboratory information management system]] (LIMS) front-end that provides an extensible framework for better laboratory functionality.		'''OpenLabFramework''' (formerly '''Open Laboratory Framework''') is a web-based [[laboratory information management system]] (LIMS) front-end — with additional [[electronic laboratory notebook]] (ELN) capabilities — that provides an extensible framework for better laboratory functionality.

	==Product history==		==Product history==
	The OpenLabFramework project appears to have began as the "Open Laboratory Framework" project, with it first being opened up on Sourceforge on February 15, 2010.<ref name="OLFHomeArch">{{cite web \|archiveurl=https://web.archive.org/web/20100821221349/http://sourceforge.net/projects/openlaboratory \|url=http://sourceforge.net/projects/openlaboratory/ \|title=Open Laboratory Framework \|publisher=SourceForge \|archivedate=21 August 2010 \|accessdate=25 January 2016}}</ref> by Jochen Thomas and Markus List, likely as part of a project through German software developer OSTHUS.<ref name="MListLinked">{{cite web \|url=http://dk.linkedin.com/pub/markus-list/27/809/3ba \|title=Markus List - Bioinformatics in Cancer Research \|publisher=LinkedIn \|accessdate=02 October 2012}}</ref><ref name="JThomasOhloh">{{cite web \|url=http://www.ohloh.net/accounts/jochen-thomas \|title=J. Thomas - Ohloh \|publisher=Ohloh \|accessdate=02 October 2012}}</ref> The last SourceForge-based file release was with version 0.7 on December 7, 2011<ref name="OLFStartArch" />. On January 7, 2014, the project moved from SourceForge to GitHub<ref name="OLFStartArch" />, with several updates to the software arriving in 2014 and 2015.<ref name="OLFGit">{{cite web \|url=https://github.com/NanoCAN/OpenLabFramework/releases \|title=NanoCAN/OpenLabFramework - Releases \|publisher=GitHub \|accessdate=15 June 2015}}</ref> This coincided with the 2014 publication of a research paper on the software by List et al., citing the following as reason for the software's creation<ref name="ListEff14">{{cite journal \|title=Efficient sample tracking with OpenLabFramework \|journal=Scientific Reports \|author=List, Markus; Schmidt, Steffen; Trojnar, Jakub; Thomas, Jochen; Thomassen, Mads; Kruse, Torben A.; Tan, Qihua; Baumbach, Jan; Mollenhauer, Jan \|volume=4 \|pages=4278 \|year=2014 \|doi=10.1038/srep04278 \|pmid=24589879 \|pmc=PMC3940979 \|accessdate=25 January 2016}}</ref>:		The OpenLabFramework project appears to have began as the "Open Laboratory Framework" project, with it first being opened up on Sourceforge on February 15, 2010.<ref name="OLFHomeArch">{{cite web \|archiveurl=https://web.archive.org/web/20100821221349/http://sourceforge.net/projects/openlaboratory \|url=http://sourceforge.net/projects/openlaboratory/ \|title=Open Laboratory Framework \|publisher=SourceForge \|archivedate=21 August 2010 \|accessdate=25 January 2016}}</ref> by Jochen Thomas and Markus List, likely as part of a project through German software developer OSTHUS.<ref name="MListLinked">{{cite web \|url=http://dk.linkedin.com/pub/markus-list/27/809/3ba \|title=Markus List - Bioinformatics in Cancer Research \|publisher=LinkedIn \|accessdate=02 October 2012}}</ref><ref name="JThomasOhloh">{{cite web \|url=http://www.ohloh.net/accounts/jochen-thomas \|title=J. Thomas - Ohloh \|publisher=Ohloh \|accessdate=02 October 2012}}</ref> The last SourceForge-based file release was with version 0.7 on December 7, 2011<ref name="OLFStartArch" />. On January 7, 2014, the project moved from SourceForge to GitHub<ref name="OLFStartArch" />, with several updates to the software arriving in 2014 and 2015.<ref name="OLFGit">{{cite web \|url=https://github.com/NanoCAN/OpenLabFramework/releases \|title=NanoCAN/OpenLabFramework - Releases \|publisher=GitHub \|accessdate=15 June 2015}}</ref> This coincided with the 2014 publication of a research paper on the software by List ''et al.'', citing the following as reason for the software's creation<ref name="ListEff14">{{cite journal \|title=Efficient sample tracking with OpenLabFramework \|journal=Scientific Reports \|author=List, Markus; Schmidt, Steffen; Trojnar, Jakub; Thomas, Jochen; Thomassen, Mads; Kruse, Torben A.; Tan, Qihua; Baumbach, Jan; Mollenhauer, Jan \|volume=4 \|pages=4278 \|year=2014 \|doi=10.1038/srep04278 \|pmid=24589879 \|pmc=PMC3940979 \|accessdate=25 January 2016}}</ref>:

	<blockquote>There is, however, no dedicated LIMS for the management of large vector construct and cell line libraries. At our Lundbeck Foundation Center of Excellence in Nanomedicine (NanoCAN) at the University of Southern Denmark in Odense such large-scale libraries need to be handled efficiently ... This motivated us to develop a novel open-source LIMS platform: OpenLabFramework (OLF).</blockquote>		<blockquote>There is, however, no dedicated LIMS for the management of large vector construct and cell line libraries. At our Lundbeck Foundation Center of Excellence in Nanomedicine (NanoCAN) at the University of Southern Denmark in Odense such large-scale libraries need to be handled efficiently ... This motivated us to develop a novel open-source LIMS platform: OpenLabFramework (OLF).</blockquote>

			In the fall of 2015, List ''et al.'' published another paper describing a new add-on to OpenLabFramework called "OpenLabNotes." Citing the benefits of integrating a home-grown ELN into the LIMS platform, the group stated: "OpenLabNotes effectively closes the gap between research documentation and sample management, thus making OpenLabFramework more attractive for laboratories that seek to increase productivity through electronic data management."<ref name="ListOpenLabNotes15">{{cite journal \|title=OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework \|journal=Journal of Integrative Bioinformatics \|author=List, M.; Franz, M.; Tan, Q.; Mollenhauer, J.; Baumbach, J. \|volume=12 \|issue=3 \|pages=274 \|year=2015 \|doi=10.2390/biecoll-jib-2015-274 \|pmid=26673790}}</ref> OpenLabNotes was first introduced to the framework with version 1.3.0 in February 2015<ref name="OLF130">{{cite web \|url=https://github.com/NanoCAN/OpenLabFramework/releases/tag/v1.3.0 \|title=v.1.3.0 WAR file for server deployment \|author=List, M. \|publisher=GitHub, Inc \|date=25 February 2015 \|accessdate=21 July 2016}}</ref> and significantly improved with version 1.3.2 in May 2015.<ref name="OLF132">{{cite web \|url=https://github.com/NanoCAN/OpenLabFramework/releases/tag/v.1.3.2 \|title=v.1.3.2 WAR file for server deployment \|author=List, M. \|publisher=GitHub, Inc \|date=04 May 2015 \|accessdate=21 July 2016}}</ref>

	==Features==		==Features==
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	* experiment management		* experiment management
	* inventory management		* inventory management
			* [[electronic laboratory notebook]] capabilities<ref name="ListOpenLabNotes15" /><ref name="OLF132" />
	* barcode and printing support		* barcode and printing support
	* document management		* document management
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	==Further reading==		==Further reading==
	* {{cite journal \|title=Efficient sample tracking with OpenLabFramework \|journal=Scientific Reports \|author=List, Markus; Schmidt, Steffen; Trojnar, Jakub; Thomas, Jochen; Thomassen, Mads; Kruse, Torben A.; Tan, Qihua; Baumbach, Jan; Mollenhauer, Jan \|volume=4 \|pages=4278 \|year=2014 \|doi=10.1038/srep04278 \|pmid=24589879 \|pmc=PMC3940979}} (Alternatively, found on LIMSwiki [[Journal:Efficient sample tracking with OpenLabFramework\|here]].)		* {{cite journal \|title=Efficient sample tracking with OpenLabFramework \|journal=Scientific Reports \|author=List, Markus; Schmidt, Steffen; Trojnar, Jakub; Thomas, Jochen; Thomassen, Mads; Kruse, Torben A.; Tan, Qihua; Baumbach, Jan; Mollenhauer, Jan \|volume=4 \|pages=4278 \|year=2014 \|doi=10.1038/srep04278 \|pmid=24589879 \|pmc=PMC3940979}} (Alternatively, found on LIMSwiki [[Journal:Efficient sample tracking with OpenLabFramework\|here]].)

			* {{cite journal \|title=OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework \|journal=Journal of Integrative Bioinformatics \|author=List, Markus; Franz, Michael; Tan, Qihua; Mollenhauer, Jan; Baumbach, Jan \|volume=12 \|issue=3 \|pages=274 \|year=2015 \|doi=10.2390/biecoll-jib-2015-274 \|pmid=26673790}}

	==External links==		==External links==
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:Bioinformatics software (open source)]]		[[Category:Bioinformatics software (open source)]]
			[[Category:Electronic laboratory notebooks (open source)]]
	[[Category:Laboratory informatics software (open source)]]		[[Category:Laboratory informatics software (open source)]]
	[[Category:Laboratory information management systems (open source)]]		[[Category:Laboratory information management systems (open source)]]

Shawndouglas: /* Entities using OpenLabFramework */

2016-01-25T20:02:28Z

Entities using OpenLabFramework

← Older revision		Revision as of 20:02, 25 January 2016
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	==Entities using OpenLabFramework==		==Entities using OpenLabFramework==
			University of Southern Denmark in Odense


	==Further reading==		==Further reading==

Shawndouglas: Recreated due to name change.

2016-01-25T20:01:56Z

Recreated due to name change.

New page

{{Infobox software
| name = OpenLabFramework
| title = OpenLabFramework
| logo = 
| screenshot = 
| caption =
| collapsible =
| author =
| developer = Markus List and Jochen Thomas
| released = {{Start date|2010|06|21}} (0.1)<ref name="OLFStartArch">{{cite web |archiveurl=https://web.archive.org/web/20100821221354/http://sourceforge.net/projects/openlaboratory/files |url=http://sourceforge.net/projects/openlaboratory/files/ |title=Open Laboratory Framework - Files |publisher=SourceForge |archivedate=21 August 2010 |accessdate=25 January 2016}}</ref>
| discontinued =
| frequently updated = yes
| programming language = JavaScript, XML
| operating system = platform-independent
| platform =
| size =
| language =
| status =
| genre = [[Laboratory informatics]] software
| license = GNU Public License v3.0<ref name="OLFOhloh">{{cite web |url=http://www.ohloh.net/p/olf |title=Open Laboratory Framework: Project Summary |publisher=Ohloh |accessdate=02 October 2012}}</ref>
| website = [https://github.com/NanoCAN/OpenLabFramework github.com/NanoCAN/OpenLabFramework]
}}

'''OpenLabFramework''' (formerly '''Open Laboratory Framework''') is a web-based [[laboratory information management system]] (LIMS) front-end that provides an extensible framework for better laboratory functionality.

==Product history==
The OpenLabFramework project appears to have began as the "Open Laboratory Framework" project, with it first being opened up on Sourceforge on February 15, 2010.<ref name="OLFHomeArch">{{cite web |archiveurl=https://web.archive.org/web/20100821221349/http://sourceforge.net/projects/openlaboratory |url=http://sourceforge.net/projects/openlaboratory/ |title=Open Laboratory Framework |publisher=SourceForge |archivedate=21 August 2010 |accessdate=25 January 2016}}</ref> by Jochen Thomas and Markus List, likely as part of a project through German software developer OSTHUS.<ref name="MListLinked">{{cite web |url=http://dk.linkedin.com/pub/markus-list/27/809/3ba |title=Markus List - Bioinformatics in Cancer Research |publisher=LinkedIn |accessdate=02 October 2012}}</ref><ref name="JThomasOhloh">{{cite web |url=http://www.ohloh.net/accounts/jochen-thomas |title=J. Thomas - Ohloh |publisher=Ohloh |accessdate=02 October 2012}}</ref> The last SourceForge-based file release was with version 0.7 on December 7, 2011<ref name="OLFStartArch" />. On January 7, 2014, the project moved from SourceForge to GitHub<ref name="OLFStartArch" />, with several updates to the software arriving in 2014 and 2015.<ref name="OLFGit">{{cite web |url=https://github.com/NanoCAN/OpenLabFramework/releases |title=NanoCAN/OpenLabFramework - Releases |publisher=GitHub |accessdate=15 June 2015}}</ref> This coincided with the 2014 publication of a research paper on the software by List et al., citing the following as reason for the software's creation<ref name="ListEff14">{{cite journal |title=Efficient sample tracking with OpenLabFramework |journal=Scientific Reports |author=List, Markus; Schmidt, Steffen; Trojnar, Jakub; Thomas, Jochen; Thomassen, Mads; Kruse, Torben A.; Tan, Qihua; Baumbach, Jan; Mollenhauer, Jan |volume=4 |pages=4278 |year=2014 |doi=10.1038/srep04278 |pmid=24589879 |pmc=PMC3940979 |accessdate=25 January 2016}}</ref>:

<blockquote>There is, however, no dedicated LIMS for the management of large vector construct and cell line libraries. At our Lundbeck Foundation Center of Excellence in Nanomedicine (NanoCAN) at the University of Southern Denmark in Odense such large-scale libraries need to be handled efficiently ... This motivated us to develop a novel open-source LIMS platform: OpenLabFramework (OLF).</blockquote>

==Features==
Features of OpenLabFramework include<ref name="OLFHomeArch" />:

* web-based front-end
* extensible framework
* experiment management
* inventory management
* barcode and printing support
* document management
* data analysis

==Hardware/software requirements==
Installation requirements [https://github.com/NanoCAN/OpenLabFramework/wiki/Getting-Started include]:

* Grails 2.2.x
* a supported browser, including Chrome (31.0.1650.63) or Firefox (26.0)

==Videos, screenshots, and other media==
* A demo of OpenLabFramework can be found at [http://www.nanocan.dk/openlabframework/demo http://www.nanocan.dk/openlabframework/demo]. (user: admin, password: demo0815)

==Entities using OpenLabFramework==

==Further reading==
* {{cite journal |title=Efficient sample tracking with OpenLabFramework |journal=Scientific Reports |author=List, Markus; Schmidt, Steffen; Trojnar, Jakub; Thomas, Jochen; Thomassen, Mads; Kruse, Torben A.; Tan, Qihua; Baumbach, Jan; Mollenhauer, Jan |volume=4 |pages=4278 |year=2014 |doi=10.1038/srep04278 |pmid=24589879 |pmc=PMC3940979}} (Alternatively, found on LIMSwiki [[Journal:Efficient sample tracking with OpenLabFramework|here]].)

==External links==
* [https://github.com/NanoCAN/OpenLabFramework OpenLabFramework on GitHub]
* [http://www.ohloh.net/p/olf OpenLabFramework on Ohloh]
* [https://github.com/NanoCAN/OpenLabFramework/wiki OpenLabFramework wiki]

==References==
<references />


[[Category:Bioinformatics software (open source)]]
[[Category:Laboratory informatics software (open source)]]
[[Category:Laboratory information management systems (open source)]]