OpenChrom - Revision history

Shawndouglas: Added history.

2024-01-04T19:10:20Z

Added history.

← Older revision		Revision as of 19:10, 4 January 2024
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	OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2010 \|volume=11 \|pages=405 \|title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data \|author=Wenig, Philip; Odermatt, Juergen \|url=http://www.biomedcentral.com/1471-2105/11/405 \|doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web \|url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 \|title=Thomas Krenn Open Source Förderung 2010 \|publisher=Thomas-Krenn.AG \|date=30 June 2010 \|accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web \|url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php \|title=Eclipse Community Awards Winners Announced \|publisher=The Eclipse Foundation \|date=21 March 2011 \|accessdate=26 September 2012}}</ref>		OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2010 \|volume=11 \|pages=405 \|title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data \|author=Wenig, Philip; Odermatt, Juergen \|url=http://www.biomedcentral.com/1471-2105/11/405 \|doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web \|url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 \|title=Thomas Krenn Open Source Förderung 2010 \|publisher=Thomas-Krenn.AG \|date=30 June 2010 \|accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web \|url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php \|title=Eclipse Community Awards Winners Announced \|publisher=The Eclipse Foundation \|date=21 March 2011 \|accessdate=26 September 2012}}</ref>

			As of January 2024, it's not clear if source code is still being released in a versioned format. The last tagged/versioned source code on SourceForge is 1.3.0 and on GitHub is 1.1.0. The main website indicates there's a 1.5.0 version of the source code, but this doesn't appear on either SourceForge or GitHub. The Wikipedia page also seems to indicate there's a 1.5.0 release, as well as a 1.4.0 release, but it fails to cite any sources for those releases and associated release dates.

	==Features==		==Features==
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	==External links==		==External links==
			* [https://github.com/OpenChrom/openchrom OpenChrom on GitHub]
	* [https://~~code.google~~.com/~~a/eclipselabs.org/p~~/openchrom/ OpenChrom on ~~Google Code~~]
	* [http://openchrom.wordpress.com/ OpenChrom blog]		* [http://openchrom.wordpress.com/ OpenChrom blog]
	* [http://www.openchrom.net/dokuwiki/doku.php OpenChrom documentation]

	~~OpenChrom can also be found on SourceForge. However, use caution when downloading and installing from there; the install package may contain undesirable add-on software.~~

	==References==		==References==

Shawndouglas: CDMS to CDS

2019-04-18T20:37:30Z

CDMS to CDS

← Older revision		Revision as of 20:37, 18 April 2019
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	\| language =		\| language =
	\| status =		\| status =
	\| genre = [[Laboratory informatics]] software<br />[[Chromatography data ~~management~~ system\|~~CDMS~~]] software		\| genre = [[Laboratory informatics]] software<br />[[Chromatography data system\|CDS]] software
	\| license = Eclipse Public License 1.0		\| license = Eclipse Public License 1.0
	\| website = [http://www.openchrom.net/ OpenChrom.net]		\| website = [http://www.openchrom.net/ OpenChrom.net]
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:Laboratory informatics software (open source)]]		[[Category:Laboratory informatics software (open source)]]
	[[Category:Chromatography data ~~management~~ system (open source)]]		[[Category:Chromatography data system (open source)]]

Shawndouglas: /* External links */ Removed standalone SF links so as to not encourage downloading from that site.

2015-06-15T20:17:29Z

External links: Removed standalone SF links so as to not encourage downloading from that site.

← Older revision		Revision as of 20:17, 15 June 2015
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	==External links==		==External links==

	* [~~http~~://~~sourceforge~~.~~net~~/~~projects~~/openchrom/ OpenChrom on ~~Sourceforge~~]		* [https://code.google.com/a/eclipselabs.org/p/openchrom/ OpenChrom on Google Code]
	* [http://openchrom.wordpress.com/ OpenChrom blog]		* [http://openchrom.wordpress.com/ OpenChrom blog]
	* [http://www.openchrom.net/dokuwiki/doku.php OpenChrom documentation]		* [http://www.openchrom.net/dokuwiki/doku.php OpenChrom documentation]

			OpenChrom can also be found on SourceForge. However, use caution when downloading and installing from there; the install package may contain undesirable add-on software.

	==References==		==References==

Shawndouglas: /* Product history */ Removed unnecessary history.

2014-09-02T19:33:47Z

Product history: Removed unnecessary history.

← Older revision		Revision as of 19:33, 2 September 2014
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	OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2010 \|volume=11 \|pages=405 \|title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data \|author=Wenig, Philip; Odermatt, Juergen \|url=http://www.biomedcentral.com/1471-2105/11/405 \|doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web \|url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 \|title=Thomas Krenn Open Source Förderung 2010 \|publisher=Thomas-Krenn.AG \|date=30 June 2010 \|accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web \|url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php \|title=Eclipse Community Awards Winners Announced \|publisher=The Eclipse Foundation \|date=21 March 2011 \|accessdate=26 September 2012}}</ref>		OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2010 \|volume=11 \|pages=405 \|title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data \|author=Wenig, Philip; Odermatt, Juergen \|url=http://www.biomedcentral.com/1471-2105/11/405 \|doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web \|url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 \|title=Thomas Krenn Open Source Förderung 2010 \|publisher=Thomas-Krenn.AG \|date=30 June 2010 \|accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web \|url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php \|title=Eclipse Community Awards Winners Announced \|publisher=The Eclipse Foundation \|date=21 March 2011 \|accessdate=26 September 2012}}</ref>

	A year after its first release, the development team had progressed OpenChrom up to version 0.4.0<ref name="ChromVers" />. The latest release is version 0.8.0, made available in July 2013.<ref name="ChromStart1" />

	==Features==		==Features==

Shawndouglas: /* Product history */ Updated latest release.

2013-09-04T20:24:27Z

Product history: Updated latest release.

← Older revision		Revision as of 20:24, 4 September 2013
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	OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2010 \|volume=11 \|pages=405 \|title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data \|author=Wenig, Philip; Odermatt, Juergen \|url=http://www.biomedcentral.com/1471-2105/11/405 \|doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web \|url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 \|title=Thomas Krenn Open Source Förderung 2010 \|publisher=Thomas-Krenn.AG \|date=30 June 2010 \|accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web \|url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php \|title=Eclipse Community Awards Winners Announced \|publisher=The Eclipse Foundation \|date=21 March 2011 \|accessdate=26 September 2012}}</ref>		OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2010 \|volume=11 \|pages=405 \|title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data \|author=Wenig, Philip; Odermatt, Juergen \|url=http://www.biomedcentral.com/1471-2105/11/405 \|doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web \|url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 \|title=Thomas Krenn Open Source Förderung 2010 \|publisher=Thomas-Krenn.AG \|date=30 June 2010 \|accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web \|url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php \|title=Eclipse Community Awards Winners Announced \|publisher=The Eclipse Foundation \|date=21 March 2011 \|accessdate=26 September 2012}}</ref>

	A year after its first release, the development team had progressed OpenChrom up to version 0.4.0<ref name="ChromVers" />. The latest release is version 0.7.0, made available in ~~November 2012~~.<ref name="ChromStart1" />		A year after its first release, the development team had progressed OpenChrom up to version 0.4.0<ref name="ChromVers" />. The latest release is version 0.8.0, made available in July 2013.<ref name="ChromStart1" />

	==Features==		==Features==

Shawndouglas: /* Product history */ Updated release info.

2013-02-01T22:04:26Z

Product history: Updated release info.

← Older revision		Revision as of 22:04, 1 February 2013
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	OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2010 \|volume=11 \|pages=405 \|title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data \|author=Wenig, Philip; Odermatt, Juergen \|url=http://www.biomedcentral.com/1471-2105/11/405 \|doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web \|url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 \|title=Thomas Krenn Open Source Förderung 2010 \|publisher=Thomas-Krenn.AG \|date=30 June 2010 \|accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web \|url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php \|title=Eclipse Community Awards Winners Announced \|publisher=The Eclipse Foundation \|date=21 March 2011 \|accessdate=26 September 2012}}</ref>		OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2010 \|volume=11 \|pages=405 \|title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data \|author=Wenig, Philip; Odermatt, Juergen \|url=http://www.biomedcentral.com/1471-2105/11/405 \|doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web \|url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 \|title=Thomas Krenn Open Source Förderung 2010 \|publisher=Thomas-Krenn.AG \|date=30 June 2010 \|accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web \|url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php \|title=Eclipse Community Awards Winners Announced \|publisher=The Eclipse Foundation \|date=21 March 2011 \|accessdate=26 September 2012}}</ref>

	A year after its first release, the development team had progressed OpenChrom up to version 0.4.0<ref name="ChromVers" />. The ~~next anticipated~~ release (version 0.7.0~~) is scheduled for October~~ 2012.<ref name="~~ChromVers~~" />		A year after its first release, the development team had progressed OpenChrom up to version 0.4.0<ref name="ChromVers" />. The latest release is version 0.7.0, made available in November 2012.<ref name="ChromStart1" />

	==Features==		==Features==

Shawndouglas: Created page.

2012-09-26T19:16:33Z

Created page.

New page

{{Infobox software
| name = OpenChrom
| title = OpenChrom
| logo = [[Image:Openchrom.png‎]]
| screenshot = 
| caption =
| collapsible =
| author =
| developer = OpenChrom development team
| released = {{Start date|2010|04|12}} (v0.1.0)<ref name="ChromStart1">{{cite web |url=http://sourceforge.net/projects/openchrom/files/ |title=OpenChrom - Files |publisher=Sourceforge |date=12 April 2010 |accessdate=26 September 2012}}</ref><ref name="ChromVers">{{cite web |url=http://www.openchrom.net/dokuwiki/doku.php?id=openchrom_versions |title=OpenChrom Versions |publisher=Wenig, Philip |date=27 March 2012 |accessdate=26 September 2012}}</ref>
| discontinued =
| frequently updated = yes
| programming language = Java
| operating system = Multi-platform
| platform =
| size =
| language =
| status =
| genre = [[Laboratory informatics]] software<br />[[Chromatography data management system|CDMS]] software
| license = Eclipse Public License 1.0
| website = [http://www.openchrom.net/ OpenChrom.net]
}}

'''OpenChrom''' is free extensible (via plug-ins) open-source [[chromatography]] and [[mass spectrometry]] software designed to natively handle mass spectrometry system data files.<ref name="ChromHome">{{cite web |url=http://www.openchrom.net/ |title=OpenChrom |publisher=Wenig, Philip |accessdate=26 September 2012}}</ref>

==Product history==

OpenChrom was created to resolve the constraints of accessing, managing, and representing mass spectral data (as well as accessing the algorithms used to process the data) from propriety closed systems, typically limited to certain software platforms.<ref name="BMCPaper">{{cite journal |journal=BMC Bioinformatics |year=2010 |volume=11 |pages=405 |title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data |author=Wenig, Philip; Odermatt, Juergen |url=http://www.biomedcentral.com/1471-2105/11/405 |doi=10.1186/1471-2105-11-405}}</ref> Version 0.1.0, the first public release, became available on April 12, 2010.<ref name="ChromStart1" /> In August, OpenChrom won additional funds to continue development via the Thomas Krenn Open Source Förderung competition.<ref name="TKFund">{{cite web |url=http://www.thomas-krenn.com/de/wiki/Thomas_Krenn_Open_Source_Förderung_2010 |title=Thomas Krenn Open Source Förderung 2010 |publisher=Thomas-Krenn.AG |date=30 June 2010 |accessdate=26 September 2012}}</ref> OpenChrom won another award on March 21, 2011, in the form of The Eclipse Foundation's award for "Best RCP Application."<ref name="EclipseAward">{{cite web |url=http://www.eclipse.org/org/press-release/20110321_awardwinners.php |title=Eclipse Community Awards Winners Announced |publisher=The Eclipse Foundation |date=21 March 2011 |accessdate=26 September 2012}}</ref>

A year after its first release, the development team had progressed OpenChrom up to version 0.4.0<ref name="ChromVers" />. The next anticipated release (version 0.7.0) is scheduled for October 2012.<ref name="ChromVers" />

==Features==

Features include<ref name="ChromHome" />:

* native handling of chromatographic data
* data import and export
* batch processing
* baseline detection
* peak detection and integration
* filtering
* extensible via plug-ins
* advanced GUI

==Hardware/software requirements==

Current requirements include<ref name="ChromReqs">{{cite web |url=http://www.openchrom.net/dokuwiki/doku.php?id=system_prerequisites |title=OpenChrom System Prerequisites |publisher=Wenig, Philip |date=27 March 2012 |accessdate=26 September 2012}}</ref>:

* Java 7
* 1GB RAM
* 20GB HDD space
* 1GHz processor

==Videos, screenshots, and other media==

Videos:

* [http://www.youtube.com/watch?v=CK7LccWgmls OpenChrom - the open source ChemStation alternative]
* [http://www.youtube.com/watch?v=l0qPF15cWGk Chromatogram Batch Processing]
* [http://www.youtube.com/watch?v=8f25HaAu5K8 Chromatogram Filter]
* [http://www.youtube.com/watch?v=WMOAt5RTnxY Chromatogram Overlay]
* [http://www.youtube.com/watch?v=7S6bFx8jcHw Installing Plug-ins]
* [http://www.youtube.com/watch?v=LInZDVHgc14 Manual Peak Detection]
* [http://www.youtube.com/watch?v=Fvpmze-CiqE Mass Spectrum Selection]
* [http://www.youtube.com/watch?v=7HsMzCWLx8g NIST Peak Identification]
* [http://www.youtube.com/watch?v=06AVkpu9IjA Peak Detection]

Screenshots can be found on the [http://www.openchrom.net/main/content/screenshots.php project website].

OpenChrom also has a number of [http://www.openchrom.net/main/content/plugins.php available plug-ins].

==Entities using OpenChrom==

==Further reading==

* {{cite journal |journal=Journal of Analytical and Applied Pyrolysis |year=2011 |volume=11 |pages=405 |title=OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data |author=Wenig, Philip; Odermatt, Juergen |url=http://www.biomedcentral.com/1471-2105/11/405 |doi=10.1186/1471-2105-11-405}}
* {{cite journal |journal=BMC Bioinformatics |year=2010 |volume=92 |issue=1 |pages=202–208 |title=Post-optimization of Py-GC/MS data: A case study using a new digital chemical noise reduction filter (NOISERA) to enhance the data quality utilizing OpenChrom mass spectrometric software |author=Wenig, Philip |url=http://www.sciencedirect.com/science/article/pii/S0165237011001069 |doi=10.1016/j.jaap.2011.05.013}}

==External links==

* [http://sourceforge.net/projects/openchrom/ OpenChrom on Sourceforge]
* [http://openchrom.wordpress.com/ OpenChrom blog]
* [http://www.openchrom.net/dokuwiki/doku.php OpenChrom documentation]

==References==
<references />


[[Category:Laboratory informatics software (open source)]]
[[Category:Chromatography data management system (open source)]]