MolabIS - Revision history

Shawndouglas: /* References */

2021-05-04T16:37:53Z

References

← Older revision		Revision as of 16:37, 4 May 2021
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	~~[[Category:Bioinformatics software (open source)]]~~
	[[Category:Discontinued or abandoned software (open source)]]		[[Category:Discontinued or abandoned software (open source)]]
	~~[[Category:Laboratory informatics software (open source)]]~~
	~~[[Category:Laboratory information management systems (open source)]]~~

Shawndouglas: Updated to inactive.

2018-05-04T16:20:56Z

Updated to inactive.

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	\| developer = Cong Van Chi Truong		\| developer = Cong Van Chi Truong
	\| released = {{Start date\|2010\|03\|16}} (1.0)<ref name="MolabISStart">{{cite web \|url=http://www.molabis.org/index.php?option=com_content&view=article&id=49:molabis-10-released&catid=39:molabis-releases \|title=MolabIS 1.0 Released \|author=Truong Van Chi Cong \|publisher=Cong Van Chi Truong \|date=16 March 2010 \|accessdate=30 September 2012}}</ref>		\| released = {{Start date\|2010\|03\|16}} (1.0)<ref name="MolabISStart">{{cite web \|url=http://www.molabis.org/index.php?option=com_content&view=article&id=49:molabis-10-released&catid=39:molabis-releases \|title=MolabIS 1.0 Released \|author=Truong Van Chi Cong \|publisher=Cong Van Chi Truong \|date=16 March 2010 \|accessdate=30 September 2012}}</ref>
	\| discontinued =		\| discontinued = 2018
	\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->		\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
	\| programming language = Java, Perl<ref name="MolabISSF">{{cite web \|url=http://sourceforge.net/projects/molabis/ \|title=Molecular Genetics Information System \|publisher=SourceForge \|accessdate=30 September 2012}}</ref>		\| programming language = Java, Perl<ref name="MolabISSF">{{cite web \|url=http://sourceforge.net/projects/molabis/ \|title=Molecular Genetics Information System \|publisher=SourceForge \|accessdate=30 September 2012}}</ref>
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	}}		}}

	'''MolabIS''' ('''Molecular Labs Information System''') is web-based [[laboratory informatics]] software designed to provide a framework for data collection and management in molecular genetics labs.		'''MolabIS''' ('''Molecular Labs Information System''') was a web-based [[laboratory informatics]] software designed to provide a framework for data collection and management in molecular genetics labs.

	==Product history==		==Product history==

	Citing a lack of LIMSs capable of handling the specific needs of handling genotype and phenotype data, Cong Van Chi Truong and others from the Institute of Farm Animal Genetics in Germany decided to create "a general data		Citing a lack of LIMSs capable of handling the specific needs of handling genotype and phenotype data, Cong Van Chi Truong and others from the Institute of Farm Animal Genetics in Germany decided to create "a general data model for labs conducting Sanger [[sequencing]] and micro-satellite [[genotyping]]" and then design laboratory informatics software "for storing and managing sequence and microsatellite data in [[molecular genetics]] labs with a focus on biodiversity experiments."<ref name="MolabISPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2011 \|volume=12 \|pages=425 \|title=MolabIS - An integrated information system for storing and managing molecular genetics data \|author=VC Truong, Cong; Groeneveld, Linn F.; Morgenstern, Burkhard; Groeneveld, Eildert \|url=http://www.biomedcentral.com/1471-2105/12/425 \|doi=10.1186/1471-2105-12-425}}</ref> Version 1.0 was publicly released as open-source software on March 16, 2010<ref name="MolabISStart" />, with 1.01 arriving on April 9.
	model for labs conducting Sanger [[sequencing]] and micro-satellite [[genotyping]]" and then design laboratory informatics software "for storing and managing sequence and microsatellite data in [[molecular genetics]] labs with a focus on biodiversity experiments."<ref name="MolabISPaper">{{cite journal \|journal=BMC Bioinformatics \|year=2011 \|volume=12 \|pages=425 \|title=MolabIS - An integrated information system for storing and managing molecular genetics data \|author=VC Truong, Cong; Groeneveld, Linn F.; Morgenstern, Burkhard; Groeneveld, Eildert \|url=http://www.biomedcentral.com/1471-2105/12/425 \|doi=10.1186/1471-2105-12-425}}</ref> Version 1.0 was publicly released as open-source software on March 16, 2010<ref name="MolabISStart" />, with 1.01 arriving on April 9.

	Version 1.02, the ~~latest~~ release, was released on September 12, 2011.<ref name="MolabIS102">{{cite web \|url=http://www.molabis.org/index.php?option=com_joomdoc&task=doc_details&gid=10&Itemid=53 \|title=MolabIS Appliance 1.0.2 \|publisher=Cong Van Chi Truong \|date=12 September 2011 \|accessdate=30 September 2012}}</ref> ~~It's not known if development~~ is ~~still occurring on MolabIS~~.		Version 1.02, the last known release, was released on September 12, 2011.<ref name="MolabIS102">{{cite web \|url=http://www.molabis.org/index.php?option=com_joomdoc&task=doc_details&gid=10&Itemid=53 \|title=MolabIS Appliance 1.0.2 \|publisher=Cong Van Chi Truong \|date=12 September 2011 \|accessdate=30 September 2012}}</ref> The website went dark some time in late 2017 or early 2018, and the project is presumably dead.

	==Features==		==Features==

	Features of MolabIS ~~include~~<ref name="MolabISFeat">{{cite web \|url=http://molabis.org/index.php?option=com_content&view=article&id=48&Itemid=50 \|title=Key Features of MolabIS \|author=Truong, Cong Van Chi \|publisher=Cong Van Chi Truong \|date=2 February 2010 \|accessdate=30 September 2012}}</ref>:		Features of MolabIS included<ref name="MolabISFeat">{{cite web \|url=http://molabis.org/index.php?option=com_content&view=article&id=48&Itemid=50 \|title=Key Features of MolabIS \|author=Truong, Cong Van Chi \|publisher=Cong Van Chi Truong \|date=2 February 2010 \|accessdate=30 September 2012}}</ref>:

	* user-centric authentication		* user-centric authentication
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	==Hardware/software requirements==		==Hardware/software requirements==

	For MolabIS to install and run well, users ~~will need~~:		For MolabIS to install and run well, users required:

	* 20 GB of disk space		* 20 GB of disk space
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:Bioinformatics software (open source)]]		[[Category:Bioinformatics software (open source)]]
			[[Category:Discontinued or abandoned software (open source)]]
	[[Category:Laboratory informatics software (open source)]]		[[Category:Laboratory informatics software (open source)]]
	[[Category:Laboratory information management systems (open source)]]		[[Category:Laboratory information management systems (open source)]]

Shawndouglas: /* Further reading */ Updated ref

2016-01-21T18:23:31Z

Shawndouglas: Removed standalone SF links so as to not encourage downloading from that site.

2015-06-15T18:56:58Z

Removed standalone SF links so as to not encourage downloading from that site.

← Older revision		Revision as of 18:56, 15 June 2015
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	==External links==		==External links==

	* [http://sourceforge.net/projects/molabis/ MolabIS on SourceForge]
	* [ftp://ftp.tzv.fal.de/pub/molabis/appliance/ Current downloads of the MolabIS appliance]		* [ftp://ftp.tzv.fal.de/pub/molabis/appliance/ Current downloads of the MolabIS appliance]
	* [http://www.molabis.org/index.php?option=com_joomdoc&task=doc_details&gid=11&Itemid=53 MolabIS 1.0.2 source code package]		* [http://www.molabis.org/index.php?option=com_joomdoc&task=doc_details&gid=11&Itemid=53 MolabIS 1.0.2 source code package]

			MolabIS can also be found on SourceForge. However, use caution when downloading and installing from there; the install package may contain undesirable add-on software.

	==References==		==References==

Shawndouglas: Created article stub.

2012-09-30T21:19:53Z

Created article stub.

New page

{{Infobox software
| name = MolabIS
| title = MolabIS
| logo = [[File:Molabis_logo.png]]
| screenshot = 
| caption =
| collapsible =
| author =
| developer = Cong Van Chi Truong
| released = {{Start date|2010|03|16}} (1.0)<ref name="MolabISStart">{{cite web |url=http://www.molabis.org/index.php?option=com_content&view=article&id=49:molabis-10-released&catid=39:molabis-releases |title=MolabIS 1.0 Released |author=Truong Van Chi Cong |publisher=Cong Van Chi Truong |date=16 March 2010 |accessdate=30 September 2012}}</ref>
| discontinued =
| frequently updated = yes
| programming language = Java, Perl<ref name="MolabISSF">{{cite web |url=http://sourceforge.net/projects/molabis/ |title=Molecular Genetics Information System |publisher=SourceForge |accessdate=30 September 2012}}</ref>
| operating system = platform-independent
| platform =
| size =
| language =
| status =
| genre = [[Laboratory informatics]] software
| license = GNU Public License v3.0<ref name="MolabISSF" />
| website = [http://molabis.org/ molabis.org]
}}

'''MolabIS''' ('''Molecular Labs Information System''') is web-based [[laboratory informatics]] software designed to provide a framework for data collection and management in molecular genetics labs.

==Product history==

Citing a lack of LIMSs capable of handling the specific needs of handling genotype and phenotype data, Cong Van Chi Truong and others from the Institute of Farm Animal Genetics in Germany decided to create "a general data
model for labs conducting Sanger [[sequencing]] and micro-satellite [[genotyping]]" and then design laboratory informatics software "for storing and managing sequence and microsatellite data in [[molecular genetics]] labs with a focus on biodiversity experiments."<ref name="MolabISPaper">{{cite journal |journal=BMC Bioinformatics |year=2011 |volume=12 |pages=425 |title=MolabIS - An integrated information system for storing and managing molecular genetics data |author=VC Truong, Cong; Groeneveld, Linn F.; Morgenstern, Burkhard; Groeneveld, Eildert |url=http://www.biomedcentral.com/1471-2105/12/425 |doi=10.1186/1471-2105-12-425}}</ref> Version 1.0 was publicly released as open-source software on March 16, 2010<ref name="MolabISStart" />, with 1.01 arriving on April 9.

Version 1.02, the latest release, was released on September 12, 2011.<ref name="MolabIS102">{{cite web |url=http://www.molabis.org/index.php?option=com_joomdoc&task=doc_details&gid=10&Itemid=53 |title=MolabIS Appliance 1.0.2 |publisher=Cong Van Chi Truong |date=12 September 2011 |accessdate=30 September 2012}}</ref> It's not known if development is still occurring on MolabIS.

==Features==

Features of MolabIS include<ref name="MolabISFeat">{{cite web |url=http://molabis.org/index.php?option=com_content&view=article&id=48&Itemid=50 |title=Key Features of MolabIS |author=Truong, Cong Van Chi |publisher=Cong Van Chi Truong |date=2 February 2010 |accessdate=30 September 2012}}</ref>:

* user-centric authentication
* data entry via workflow
* project management
* protocol management
* primer and marker management
* data import and export
* sample tracking
* query and filter
* sample storage management
* batch support

==Hardware/software requirements==

For MolabIS to install and run well, users will need:

* 20 GB of disk space
* 1 to 1.5 GB of RAM
* VMware Player

Reference chapters three and four of the [ftp://ftp.tzv.fal.de/pub/molabis/doc/current.pdf MolabIS User Guide] for more information.

==Videos, screenshots, and other media==

A slideshow of program screenshots can be found [http://www.molabis.org/index.php?option=com_content&view=article&id=47&Itemid=48 here].

A web demo of the program can be [http://molabis-devel.tzv.fal.de/ accessed separately], username and password ''demo''.

The [ftp://ftp.tzv.fal.de/pub/molabis/doc/current.pdf MolabIS User Guide] is also full of useful information.

==Entities using MolabIS==

==Further reading==

* {{cite journal |journal=BMC Bioinformatics |year=2011 |volume=12 |pages=425 |title=MolabIS - An integrated information system for storing and managing molecular genetics data |author=VC Truong, Cong; Groeneveld, Linn F.; Morgenstern, Burkhard; Groeneveld, Eildert |url=http://www.biomedcentral.com/1471-2105/12/425 |doi=10.1186/1471-2105-12-425}}

==External links==

* [http://sourceforge.net/projects/molabis/ MolabIS on SourceForge]
* [ftp://ftp.tzv.fal.de/pub/molabis/appliance/ Current downloads of the MolabIS appliance]
* [http://www.molabis.org/index.php?option=com_joomdoc&task=doc_details&gid=11&Itemid=53 MolabIS 1.0.2 source code package]

==References==
<references />


[[Category:Bioinformatics software (open source)]]
[[Category:Laboratory informatics software (open source)]]
[[Category:Laboratory information management systems (open source)]]

← Older revision		Revision as of 18:23, 21 January 2016
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	==Further reading==		==Further reading==

	* {{cite journal ~~\|journal=BMC Bioinformatics \|year=2011 \|volume=12 \|pages=425~~ \|title=MolabIS - An integrated information system for storing and managing molecular genetics data \|author=VC Truong, Cong; Groeneveld, Linn F.; Morgenstern, Burkhard; Groeneveld, Eildert \|~~url~~=~~http://www.biomedcentral.com/1471-2105/~~12/425 \|doi=10.1186/1471-2105-12-425}}		* {{cite journal \|title=MolabIS - An integrated information system for storing and managing molecular genetics data \|journal=BMC Bioinformatics \|author=Truong, Cong V.C.; Groeneveld, Linn F.; Morgenstern, Burkhard; Groeneveld, Eildert \|volume=12 \|pages=425 \|year=2011 \|doi=10.1186/1471-2105-12-425 \|pmid=22040322 \|pmc=PMC3268772}}

	==External links==		==External links==