Main Page/Featured article of the week/2016 - Revision history

Shawndouglas: Text replacement - "\[\[Cerner Corporation(.*)" to "[[Vendor:Cerner Corporation$1"

2024-04-04T22:16:24Z

Text replacement - "\[\[Cerner Corporation(.*)" to "[[Vendor:Cerner Corporation$1"

← Older revision		Revision as of 22:16, 4 April 2024
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	The adoption of digital pathology offers benefits over labor-intensive, time-consuming, and error-prone manual processes. However, because most workflow and [[laboratory]] transactions are centered around the anatomical pathology laboratory information system (APLIS), adoption of digital pathology ideally requires integration with the APLIS. A digital pathology system (DPS) integrated with the APLIS was recently implemented at our institution for diagnostic use. We demonstrate how such integration supports digital workflow to sign-out anatomical pathology cases.		The adoption of digital pathology offers benefits over labor-intensive, time-consuming, and error-prone manual processes. However, because most workflow and [[laboratory]] transactions are centered around the anatomical pathology laboratory information system (APLIS), adoption of digital pathology ideally requires integration with the APLIS. A digital pathology system (DPS) integrated with the APLIS was recently implemented at our institution for diagnostic use. We demonstrate how such integration supports digital workflow to sign-out anatomical pathology cases.

	Workflow begins when pathology cases get accessioned into the APLIS ([[Cerner Corporation\|CoPathPlus]]). Glass slides from these cases are then digitized (Omnyx VL120 scanner) and automatically uploaded into the DPS (Omnyx; Integrated Digital Pathology (IDP) software v.1.3). The APLIS transmits case data to the DPS via a publishing web service. The DPS associates scanned images with the correct case using barcode labels on slides and information received from the APLIS. When pathologists remotely open a case in the DPS, additional information (e.g. gross pathology details, prior cases) gets retrieved from the APLIS through a query web service. ('''[[Journal:Digital pathology and anatomic pathology laboratory information system integration to support digital pathology sign-out\|Full article...]]''')<br />		Workflow begins when pathology cases get accessioned into the APLIS ([[Vendor:Cerner Corporation\|CoPathPlus]]). Glass slides from these cases are then digitized (Omnyx VL120 scanner) and automatically uploaded into the DPS (Omnyx; Integrated Digital Pathology (IDP) software v.1.3). The APLIS transmits case data to the DPS via a publishing web service. The DPS associates scanned images with the correct case using barcode labels on slides and information received from the APLIS. When pathologists remotely open a case in the DPS, additional information (e.g. gross pathology details, prior cases) gets retrieved from the APLIS through a query web service. ('''[[Journal:Digital pathology and anatomic pathology laboratory information system integration to support digital pathology sign-out\|Full article...]]''')<br />
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Shawndouglas: Text replacement - "\[\[Stanford University School of Medicine(.*)" to "[[Vendor:Stanford University School of Medicine$1"

2024-04-01T22:49:23Z

Text replacement - "\[\[Stanford University School of Medicine(.*)" to "[[Vendor:Stanford University School of Medicine$1"

← Older revision		Revision as of 22:49, 1 April 2024
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	Large clinical genomics studies using next generation DNA sequencing require the ability to select and track samples from a large population of patients through many experimental steps. With the number of clinical genome sequencing studies increasing, it is critical to maintain adequate [[laboratory information management system]]s to manage the thousands of patient samples that are subject to this type of genetic analysis.		Large clinical genomics studies using next generation DNA sequencing require the ability to select and track samples from a large population of patients through many experimental steps. With the number of clinical genome sequencing studies increasing, it is critical to maintain adequate [[laboratory information management system]]s to manage the thousands of patient samples that are subject to this type of genetic analysis.

	To meet the needs of clinical population studies using genome sequencing, we developed a web-based laboratory information management system (LIMS) with a flexible configuration that is adaptable to continuously evolving experimental protocols of next generation DNA sequencing technologies. Our system is referred to as [[Stanford University School of Medicine#MendeLIMS\|MendeLIMS]], is easily implemented with open source tools and is also highly configurable and extensible. MendeLIMS has been invaluable in the management of our clinical genome sequencing studies. ('''[[Journal:MendeLIMS: A web-based laboratory information management system for clinical genome sequencing\|Full article...]]''')<br />		To meet the needs of clinical population studies using genome sequencing, we developed a web-based laboratory information management system (LIMS) with a flexible configuration that is adaptable to continuously evolving experimental protocols of next generation DNA sequencing technologies. Our system is referred to as [[Vendor:Stanford University School of Medicine#MendeLIMS\|MendeLIMS]], is easily implemented with open source tools and is also highly configurable and extensible. MendeLIMS has been invaluable in the management of our clinical genome sequencing studies. ('''[[Journal:MendeLIMS: A web-based laboratory information management system for clinical genome sequencing\|Full article...]]''')<br />
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Shawndouglas: Ombox header

2024-01-02T15:37:14Z

Ombox header

← Older revision		Revision as of 15:37, 2 January 2024
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	{{ombox		{{ombox
	\| type = notice		\| type = notice
	\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]] - [[Main Page/Featured article of the week/2021\|2021]] - [[Main Page/Featured article of the week/2022\|2022]] - [[Main Page/Featured article of the week/2023\|2023]]		\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]] - [[Main Page/Featured article of the week/2021\|2021]] - [[Main Page/Featured article of the week/2022\|2022]] - [[Main Page/Featured article of the week/2023\|2023]] - [[Main Page/Featured article of the week/2024\|2024]]
	}}		}}

Shawndouglas: Updated for 2023.

2023-01-03T15:42:15Z

Updated for 2023.

← Older revision		Revision as of 15:42, 3 January 2023
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	{{ombox		{{ombox
	\| type = notice		\| type = notice
	\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]] - [[Main Page/Featured article of the week/2021\|2021]] - [[Main Page/Featured article of the week/2022\|2022]]		\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]] - [[Main Page/Featured article of the week/2021\|2021]] - [[Main Page/Featured article of the week/2022\|2022]] - [[Main Page/Featured article of the week/2023\|2023]]
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Shawndouglas: Added 2022

2022-01-03T16:34:25Z

Added 2022

← Older revision		Revision as of 16:34, 3 January 2022
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	{{ombox		{{ombox
	\| type = notice		\| type = notice
	\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]] - [[Main Page/Featured article of the week/2021\|2021]]		\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]] - [[Main Page/Featured article of the week/2021\|2021]] - [[Main Page/Featured article of the week/2022\|2022]]
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Shawndouglas: Added 2021

2021-06-17T00:07:58Z

Added 2021

← Older revision		Revision as of 00:07, 17 June 2021
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	{{ombox		{{ombox
	\| type = notice		\| type = notice
	\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]]		\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]] - [[Main Page/Featured article of the week/2021\|2021]]
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Shawndouglas: Added 2020

2020-01-08T15:30:59Z

Added 2020

← Older revision		Revision as of 15:30, 8 January 2020
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	\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]]		\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]] - [[Main Page/Featured article of the week/2020\|2020]]
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Shawndouglas: Added 2019 to the top links

2019-01-07T16:30:41Z

Added 2019 to the top links

← Older revision		Revision as of 16:30, 7 January 2019
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	\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]]		\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]] - [[Main Page/Featured article of the week/2019\|2019]]
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Shawndouglas: Added 2018 to header

2018-01-08T17:23:21Z

Added 2018 to header

← Older revision		Revision as of 17:23, 8 January 2018
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	\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]]		\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]] - [[Main Page/Featured article of the week/2018\|2018]]
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Shawndouglas: Added last week's article of the week and updated archive links at top.

2017-01-03T16:43:58Z

Added last week's article of the week and updated archive links at top.

← Older revision		Revision as of 16:43, 3 January 2017
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	{{ombox		{{ombox
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	\| text = If you're looking for the ~~2014 archive, it can be~~ [[Main Page/Featured article of the week/2014\|~~found here~~]]~~. The~~ 2015 ~~archive is~~ [[Main Page/Featured article of the week/~~2015~~\|~~here~~]].		\| text = If you're looking for other "Article of the Week" archives: [[Main Page/Featured article of the week/2014\|2014]] - [[Main Page/Featured article of the week/2015\|2015]] - 2016 - [[Main Page/Featured article of the week/2017\|2017]]
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	<!-- Below this line begin pasting previous news -->		<!-- Below this line begin pasting previous news -->
	<h2 style="font-size:105%; font-weight:bold; text-align:left; color:#000; padding:0.2em 0.4em; width:50%;">Featured article of the week: December 12–18:</h2>		<h2 style="font-size:105%; font-weight:bold; text-align:left; color:#000; padding:0.2em 0.4em; width:50%;">Featured article of the week: December 19–25:</h2>
			<div style="padding:0.4em 1em 0.3em 1em;">
			<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig1 Mackert JournalOfMedIntRes2016 18-10.png\|240px]]</div>
			'''"[[Journal:Health literacy and health information technology adoption: The potential for a new digital divide\|Health literacy and health information technology adoption: The potential for a new digital divide]]"'''

			Approximately one-half of American adults exhibit low health literacy and thus struggle to find and use [[Health informatics\|health information]]. Low health literacy is associated with negative outcomes, including overall poorer health. [[Health information technology]] (HIT) makes health information available directly to patients through electronic tools including [[patient portal]]s, wearable technology, and mobile apps. The direct availability of this [[information]] to patients, however, may be complicated by misunderstanding of HIT privacy and information sharing. The purpose of this study was to determine whether health literacy is associated with patients’ use of four types of HIT tools: fitness and nutrition apps, activity trackers, and patient portals. ('''[[Journal:Health literacy and health information technology adoption: The potential for a new digital divide\|Full article...]]''')<br />
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			\|<br /><h2 style="font-size:105%; font-weight:bold; text-align:left; color:#000; padding:0.2em 0.4em; width:50%;">Featured article of the week: December 12–18:</h2>
	<div style="padding:0.4em 1em 0.3em 1em;">		<div style="padding:0.4em 1em 0.3em 1em;">
	<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig2 Lam BMCBioinformatics2016 17.gif\|240px]]</div>		<div style="float: left; margin: 0.5em 0.9em 0.4em 0em;">[[File:Fig2 Lam BMCBioinformatics2016 17.gif\|240px]]</div>