Leaf LIMS - Revision history

Shawndouglas: Updated to discontinued

2021-12-28T18:47:12Z

Updated to discontinued

← Older revision		Revision as of 18:47, 28 December 2021
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	\| developer = University of Liverpool, Edinburgh University, and Earlam Institute		\| developer = University of Liverpool, Edinburgh University, and Earlam Institute
	\| released = {{Start date\|2017\|07\|21}} (1.0)<ref name="LeafLIMSSReleases">{{cite web \|url=https://github.com/LeafLIMS/LeafLIMS/releases \|title=LeafLIMS - Releases \|work=LeafLIMS \|publisher=GitHub, Inc \|accessdate=06 October 2017}}</ref>		\| released = {{Start date\|2017\|07\|21}} (1.0)<ref name="LeafLIMSSReleases">{{cite web \|url=https://github.com/LeafLIMS/LeafLIMS/releases \|title=LeafLIMS - Releases \|work=LeafLIMS \|publisher=GitHub, Inc \|accessdate=06 October 2017}}</ref>
	\| discontinued =		\| discontinued = Yes
	\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->		\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
	\| programming language = Python		\| programming language = Python
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	}}		}}

	'''Leaf LIMS''' is an open-source [[laboratory information management system]] (LIMS) "designed specifically to address synthetic biology processes."<ref name="CraigLeafLIMS17">{{cite journal \|title=Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus \|journal=ACS Synthetic Biology \|author=Craig, T.; Holland, R.; D'Amore, R. et al. \|year=2017 \|doi=10.1021/acssynbio.7b00212 \|pmid=28877583}}</ref>		'''Leaf LIMS''' was an open-source [[laboratory information management system]] (LIMS) "designed specifically to address synthetic biology processes."<ref name="CraigLeafLIMS17">{{cite journal \|title=Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus \|journal=ACS Synthetic Biology \|author=Craig, T.; Holland, R.; D'Amore, R. et al. \|year=2017 \|doi=10.1021/acssynbio.7b00212 \|pmid=28877583}}</ref>

	==Product history==		==Product history==
	Leaf LIMS is a collaboration of efforts from three biological research groups: GeneMill at the University of Liverpool, the EGF at the University of Edinburgh, and the Earlham Institute.<ref name="LeafLIMSIntro">{{cite web \|url=https://leaflims.github.io/ \|title=LeafLIMS \|work=LeafLIMS \|publisher=GitHub, Inc \|accessdate=~~06 October 2017~~}}</ref> It's not clear when the project was first conceived, but Leaf LIMS appears to be a "clean slate conversion of the Odin LIMS,"<ref name="LIMSBackEndFirst">{{cite web \|url=https://github.com/LeafLIMS/LIMS-Backend/commit/cf71c34386ec5c38b427af0feb90a6837ea324d5 \|title=Initial commit \|work=LIMS-Backend \|publisher=GitHub, Inc \|date=26 May 2016 \|accessdate=06 October 2017}}</ref> presumably the biomolecular structure prediction software ODIN developed by T.J. Lane ''et al.'' on GitHub.<ref name="OdinHome">{{cite web \|url=https://github.com/tjlane/odin \|title=ODIN \|work=ODIN \|publisher=GitHub, Inc \|accessdate=~~06 October 2017~~}}</ref> The first public open-source material for Leaf LIMS started to appear on GitHub in May 2016<ref name="LIMSBackEndFirst" />, and an initial 1.0 release of the software arrived in July 2017.<ref name="LeafLIMSSReleases" />		Leaf LIMS was a collaboration of efforts from three biological research groups: GeneMill at the University of Liverpool, the EGF at the University of Edinburgh, and the Earlham Institute.<ref name="LeafLIMSIntro">{{cite web \|url=https://leaflims.github.io/ \|archiveurl=https://web.archive.org/web/20201123120529/https://leaflims.github.io/ \|title=LeafLIMS \|work=LeafLIMS \|publisher=GitHub, Inc \|archivedate=23 November 2020 \|accessdate=28 December 2021}}</ref> It's not clear when the project was first conceived, but Leaf LIMS appears to have been a "clean slate conversion of the Odin LIMS,"<ref name="LIMSBackEndFirst">{{cite web \|url=https://github.com/LeafLIMS/LIMS-Backend/commit/cf71c34386ec5c38b427af0feb90a6837ea324d5 \|title=Initial commit \|work=LIMS-Backend \|publisher=GitHub, Inc \|date=26 May 2016 \|accessdate=06 October 2017}}</ref> presumably the biomolecular structure prediction software ODIN developed by T.J. Lane ''et al.'' on GitHub.<ref name="OdinHome">{{cite web \|url=https://github.com/tjlane/odin \|archiveurl=https://web.archive.org/web/20180611002940/https://github.com/tjlane/odin \|title=ODIN \|work=ODIN \|publisher=GitHub, Inc \|archivedate=11 June 2018 \|accessdate=28 December 2021}}</ref> The first public open-source material for Leaf LIMS started to appear on GitHub in May 2016<ref name="LIMSBackEndFirst" />, and an initial 1.0 release of the software arrived in July 2017.<ref name="LeafLIMSSReleases" />

			Sometime in 2020, the GitHub page for LeafLIMS was updated with the following: "PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated."<ref name="GHLeafArch">{{cite web \|url=https://github.com/LeafLIMS/LeafLIMS \|archiveurl=https://web.archive.org/web/20201111130725/https://github.com/LeafLIMS/LeafLIMS \|title=LeafLIMS / LeafLIMS \|publisher=GitHub, Inc \|archivedate=11 November 2020 \|accessdate=28 December 2021}}</ref> The last known version is v3.3.

	==Features==		==Features==
	Features of Leaf LIMS ~~include~~<ref name="LeafLIMSIntro" />:		Features of Leaf LIMS included<ref name="LeafLIMSIntro" />:

	* sample management and tracking		* sample management and tracking
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	==Hardware/software requirements==		==Hardware/software requirements==
	Docker and docker-compose ~~are~~ used for the easiest installation, though Leaf LIMS ~~can~~ be installed (though more complicated) without Docker. ~~Consult the~~ [https://leaflims.github.io/ quick start] section ~~for~~ more details.		Docker and docker-compose were used for the easiest installation, though Leaf LIMS could also be installed (though more complicated) without Docker. The [https://web.archive.org/web/20201123120529/https://leaflims.github.io/ quick start] section had more details.

	==Videos, screenshots, and other media==		==Videos, screenshots, and other media==

	* [https://leaflims.github.io/docs/ Leaf LIMS documentation]		* [https://web.archive.org/web/20201123120536/https://leaflims.github.io/docs/ Leaf LIMS documentation]

	==Entities using Leaf LIMS==		==Entities using Leaf LIMS==
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	==External links==		==External links==

	* [https://leaflims.github.io/ Leaf LIMS start page]		* [https://leaflims.github.io/ Leaf LIMS start page] (archived)

	==References==		==References==
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:~~Bioinformatics~~ software ~~(open source)]]~~		[[Category:Discontinued or abandoned software (open source)]]
	~~[[Category:Laboratory informatics software (open source)]]~~
	~~[[Category:Laboratory information management systems~~ (open source)]]

Shawndouglas: Python

2017-10-06T20:03:37Z

Python

← Older revision		Revision as of 20:03, 6 October 2017
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	\| discontinued =		\| discontinued =
	\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->		\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
	\| programming language = ~~PHP~~		\| programming language = Python
	\| operating system = platform-independent		\| operating system = platform-independent
	\| platform =		\| platform =

Shawndouglas: Created as needed.

2017-10-06T20:01:23Z

Created as needed.

New page

{{Infobox software
| name = Leaf LIMS
| title = Leaf LIMS
| logo = 
| screenshot = 
| caption =
| collapsible =
| author =
| developer = University of Liverpool, Edinburgh University, and Earlam Institute
| released = {{Start date|2017|07|21}} (1.0)<ref name="LeafLIMSSReleases">{{cite web |url=https://github.com/LeafLIMS/LeafLIMS/releases |title=LeafLIMS - Releases |work=LeafLIMS |publisher=GitHub, Inc |accessdate=06 October 2017}}</ref>
| discontinued =
| frequently updated = yes
| programming language = PHP
| operating system = platform-independent
| platform =
| size =
| language =
| status =
| genre = [[Laboratory informatics]] software
| license = MIT License
| website = [https://github.com/LeafLIMS github.com/LeafLIMS]
}}

'''Leaf LIMS''' is an open-source [[laboratory information management system]] (LIMS) "designed specifically to address synthetic biology processes."<ref name="CraigLeafLIMS17">{{cite journal |title=Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus |journal=ACS Synthetic Biology |author=Craig, T.; Holland, R.; D'Amore, R. et al. |year=2017 |doi=10.1021/acssynbio.7b00212 |pmid=28877583}}</ref>

==Product history==
Leaf LIMS is a collaboration of efforts from three biological research groups: GeneMill at the University of Liverpool, the EGF at the University of Edinburgh, and the Earlham Institute.<ref name="LeafLIMSIntro">{{cite web |url=https://leaflims.github.io/ |title=LeafLIMS |work=LeafLIMS |publisher=GitHub, Inc |accessdate=06 October 2017}}</ref> It's not clear when the project was first conceived, but Leaf LIMS appears to be a "clean slate conversion of the Odin LIMS,"<ref name="LIMSBackEndFirst">{{cite web |url=https://github.com/LeafLIMS/LIMS-Backend/commit/cf71c34386ec5c38b427af0feb90a6837ea324d5 |title=Initial commit |work=LIMS-Backend |publisher=GitHub, Inc |date=26 May 2016 |accessdate=06 October 2017}}</ref> presumably the biomolecular structure prediction software ODIN developed by T.J. Lane ''et al.'' on GitHub.<ref name="OdinHome">{{cite web |url=https://github.com/tjlane/odin |title=ODIN |work=ODIN |publisher=GitHub, Inc |accessdate=06 October 2017}}</ref> The first public open-source material for Leaf LIMS started to appear on GitHub in May 2016<ref name="LIMSBackEndFirst" />, and an initial 1.0 release of the software arrived in July 2017.<ref name="LeafLIMSSReleases" />

==Features==
Features of Leaf LIMS include<ref name="LeafLIMSIntro" />:

* sample management and tracking
* project tracking
* inventory management
* workflow management
* group-based user permissions
* customizable alerts
* audit trail
* mobile compatibility

==Hardware/software requirements==
Docker and docker-compose are used for the easiest installation, though Leaf LIMS can be installed (though more complicated) without Docker. Consult the [https://leaflims.github.io/ quick start] section for more details.

==Videos, screenshots, and other media==

* [https://leaflims.github.io/docs/ Leaf LIMS documentation]

==Entities using Leaf LIMS==

==Further reading==
* {{cite journal |title=Leaf LIMS: A Flexible Laboratory Information Management System with a Synthetic Biology Focus |journal=ACS Synthetic Biology |author=Craig, T.; Holland, R.; D'Amore, R. et al. |year=2017 |doi=10.1021/acssynbio.7b00212 |pmid=28877583}}

==External links==

* [https://leaflims.github.io/ Leaf LIMS start page]

==References==
<references />


[[Category:Bioinformatics software (open source)]]
[[Category:Laboratory informatics software (open source)]]
[[Category:Laboratory information management systems (open source)]]