LIS feature - Revision history

Shawndouglas: Text replacement - "\[\[Technidata SAS(.*)" to "[[Vendor:Technidata SAS$1"

2024-04-05T01:16:39Z

Text replacement - "\[\[Technidata SAS(.*)" to "[[Vendor:Technidata SAS$1"

← Older revision		Revision as of 01:16, 5 April 2024
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	===Data mining===		===Data mining===

	Data mining, in the field of computational science, involves "the process of discovering interesting and useful patterns and relationships in large volumes of data" and includes three computational steps: model-learning, model evaluation, and model usage.<ref name="DataMEnBrit">{{cite web \|url=https://www.britannica.com/technology/data-mining \|work=Encyclopædia Britannica \|title=data mining \|publisher=Encyclopædia Britannica, Inc \|accessdate=18 March 2020}}</ref> As informatics software allows both research and clinical laboratories to collect and manage increasing quantities of data, a corresponding demand for tools capable of modeling that data is appearing.<ref name="IdealLIS">{{cite journal \|title=The Ideal Laboratory Information System \|journal=Archives of Pathology and Laboratory Medicine \|author=Sepulveda, J.L.; Young, D.S. \|volume=137 \|issue=8 \|pages=1129–40 \|year=2013 \|doi=10.5858/arpa.2012-0362-RA \|pmid=23216205}}</ref> For example, public health laboratories may wish to utilize data mining for statistical analysis and surveillance of populations for specific diseases. LIS like [[Technidata SAS\|Livextens]] and [[Vendor:Orchard Software Corporation#Orchard Harvest\|Orchard Harvest]] are examples of [[laboratory informatics]] software which incorporate data mining and reporting tools.<ref name="TDS_Anal">{{cite web \|url=https://www.technidata-web.com/tdanalytics \|title=TD Analaytics Livextens \|publisher=Technidata SAS \|accessdate=18 March 2020}}</ref><ref name="OSDM">{{cite web \|url=https://www.orchardsoft.com/solutions/orchard-harvest/ \|title=Orchard Harvest \|publisher=Orchard Software Corporation \|accessdate=06 January 2022}}</ref>		Data mining, in the field of computational science, involves "the process of discovering interesting and useful patterns and relationships in large volumes of data" and includes three computational steps: model-learning, model evaluation, and model usage.<ref name="DataMEnBrit">{{cite web \|url=https://www.britannica.com/technology/data-mining \|work=Encyclopædia Britannica \|title=data mining \|publisher=Encyclopædia Britannica, Inc \|accessdate=18 March 2020}}</ref> As informatics software allows both research and clinical laboratories to collect and manage increasing quantities of data, a corresponding demand for tools capable of modeling that data is appearing.<ref name="IdealLIS">{{cite journal \|title=The Ideal Laboratory Information System \|journal=Archives of Pathology and Laboratory Medicine \|author=Sepulveda, J.L.; Young, D.S. \|volume=137 \|issue=8 \|pages=1129–40 \|year=2013 \|doi=10.5858/arpa.2012-0362-RA \|pmid=23216205}}</ref> For example, public health laboratories may wish to utilize data mining for statistical analysis and surveillance of populations for specific diseases. LIS like [[Vendor:Technidata SAS\|Livextens]] and [[Vendor:Orchard Software Corporation#Orchard Harvest\|Orchard Harvest]] are examples of [[laboratory informatics]] software which incorporate data mining and reporting tools.<ref name="TDS_Anal">{{cite web \|url=https://www.technidata-web.com/tdanalytics \|title=TD Analaytics Livextens \|publisher=Technidata SAS \|accessdate=18 March 2020}}</ref><ref name="OSDM">{{cite web \|url=https://www.orchardsoft.com/solutions/orchard-harvest/ \|title=Orchard Harvest \|publisher=Orchard Software Corporation \|accessdate=06 January 2022}}</ref>

	===Customizable fields and/or interface===		===Customizable fields and/or interface===

Shawndouglas: Text replacement - "\[\[Orchard Software Corporation(.*)" to "[[Vendor:Orchard Software Corporation$1"

2024-04-04T22:30:19Z

Text replacement - "\[\[Orchard Software Corporation(.*)" to "[[Vendor:Orchard Software Corporation$1"

← Older revision		Revision as of 22:30, 4 April 2024
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	===Data mining===		===Data mining===

	Data mining, in the field of computational science, involves "the process of discovering interesting and useful patterns and relationships in large volumes of data" and includes three computational steps: model-learning, model evaluation, and model usage.<ref name="DataMEnBrit">{{cite web \|url=https://www.britannica.com/technology/data-mining \|work=Encyclopædia Britannica \|title=data mining \|publisher=Encyclopædia Britannica, Inc \|accessdate=18 March 2020}}</ref> As informatics software allows both research and clinical laboratories to collect and manage increasing quantities of data, a corresponding demand for tools capable of modeling that data is appearing.<ref name="IdealLIS">{{cite journal \|title=The Ideal Laboratory Information System \|journal=Archives of Pathology and Laboratory Medicine \|author=Sepulveda, J.L.; Young, D.S. \|volume=137 \|issue=8 \|pages=1129–40 \|year=2013 \|doi=10.5858/arpa.2012-0362-RA \|pmid=23216205}}</ref> For example, public health laboratories may wish to utilize data mining for statistical analysis and surveillance of populations for specific diseases. LIS like [[Technidata SAS\|Livextens]] and [[Orchard Software Corporation#Orchard Harvest\|Orchard Harvest]] are examples of [[laboratory informatics]] software which incorporate data mining and reporting tools.<ref name="TDS_Anal">{{cite web \|url=https://www.technidata-web.com/tdanalytics \|title=TD Analaytics Livextens \|publisher=Technidata SAS \|accessdate=18 March 2020}}</ref><ref name="OSDM">{{cite web \|url=https://www.orchardsoft.com/solutions/orchard-harvest/ \|title=Orchard Harvest \|publisher=Orchard Software Corporation \|accessdate=06 January 2022}}</ref>		Data mining, in the field of computational science, involves "the process of discovering interesting and useful patterns and relationships in large volumes of data" and includes three computational steps: model-learning, model evaluation, and model usage.<ref name="DataMEnBrit">{{cite web \|url=https://www.britannica.com/technology/data-mining \|work=Encyclopædia Britannica \|title=data mining \|publisher=Encyclopædia Britannica, Inc \|accessdate=18 March 2020}}</ref> As informatics software allows both research and clinical laboratories to collect and manage increasing quantities of data, a corresponding demand for tools capable of modeling that data is appearing.<ref name="IdealLIS">{{cite journal \|title=The Ideal Laboratory Information System \|journal=Archives of Pathology and Laboratory Medicine \|author=Sepulveda, J.L.; Young, D.S. \|volume=137 \|issue=8 \|pages=1129–40 \|year=2013 \|doi=10.5858/arpa.2012-0362-RA \|pmid=23216205}}</ref> For example, public health laboratories may wish to utilize data mining for statistical analysis and surveillance of populations for specific diseases. LIS like [[Technidata SAS\|Livextens]] and [[Vendor:Orchard Software Corporation#Orchard Harvest\|Orchard Harvest]] are examples of [[laboratory informatics]] software which incorporate data mining and reporting tools.<ref name="TDS_Anal">{{cite web \|url=https://www.technidata-web.com/tdanalytics \|title=TD Analaytics Livextens \|publisher=Technidata SAS \|accessdate=18 March 2020}}</ref><ref name="OSDM">{{cite web \|url=https://www.orchardsoft.com/solutions/orchard-harvest/ \|title=Orchard Harvest \|publisher=Orchard Software Corporation \|accessdate=06 January 2022}}</ref>

	===Customizable fields and/or interface===		===Customizable fields and/or interface===

Shawndouglas: Fix link to LIS vendor

2024-03-29T17:22:53Z

Fix link to LIS vendor

← Older revision		Revision as of 17:22, 29 March 2024
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	\| type = notice		\| type = notice
	\| style = width: 960px;		\| style = width: 960px;
	\| text = '''You can find a listing''' of all LIS vendors—and by extension, the features their products offer—on the [[:LIS vendor\|LIS vendor page]].		\| text = '''You can find a listing''' of all LIS vendors—and by extension, the features their products offer—on the [[:Vendor:LIS vendor\|LIS vendor page]].
	}}		}}

Shawndouglas: Text replacement - "\[\[Genohm SA(.*)" to "[[Vendor:Genohm SA$1"

2024-03-29T16:59:23Z

Text replacement - "\[\[Genohm SA(.*)" to "[[Vendor:Genohm SA$1"

← Older revision		Revision as of 16:59, 29 March 2024
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	===ELN support or integration===		===ELN support or integration===

	The functionality of solutions such as an LIS and LIMS began to blur with that of an [[electronic laboratory notebook\|ELN]] in the 2000s, with both types of software incorporating features from the other.<ref name="SciCompWorld1">{{cite web\|url=https://www.scientific-computing.com/feature/state-eln-market?feature_id=50 \|author=Elliot, M.H. \|title=The state of the ELN Market \|work=Scientific Computing World \|date=December 2006–January 2007 \|accessdate=17 March 2020}}</ref><ref name="SciCompELN">{{cite web \|url=http://www.scientificcomputing.com/articles-IN-Informatics-Convergence-Presents-Opportunities-and-Challenges-111111.aspx \|archiveurl=https://web.archive.org/web/20160417085757/https://www.scientificcomputing.com/articles/2011/11/informatics-convergence-presents-opportunities-and-challenges \|author=Elliot, Michael H. \|title=Informatics Convergence Presents Opportunities and Challenges \|publisher=Scientific Computing \|date=October 2011 \|archivedate=17 April 2016 \|accessdate=17 March 2020}}</ref> More than a decade later, the ELN has become more distinct in purpose and functionality and is typically sold as a stand-alone solution. However, some vendors such as [[Genohm SA\|Genohm]] have decided to integrate ELN functionality into their solution in order to provide greater flexibility to researchers.<ref name="GenohmHome">{{cite web \|url=https://www.genohm.com/ \|title=SLIMS: Manage your lab data in one place \|publisher=Genohm SA \|accessdate=17 March 2020}}</ref> While it has been more common to see this sort of melding in a LIMS, it has been less common in the LIS. Yet some LIS may include some sort of integration or compatibility with an ELN, and thusly this functionality is at least mentioned.		The functionality of solutions such as an LIS and LIMS began to blur with that of an [[electronic laboratory notebook\|ELN]] in the 2000s, with both types of software incorporating features from the other.<ref name="SciCompWorld1">{{cite web\|url=https://www.scientific-computing.com/feature/state-eln-market?feature_id=50 \|author=Elliot, M.H. \|title=The state of the ELN Market \|work=Scientific Computing World \|date=December 2006–January 2007 \|accessdate=17 March 2020}}</ref><ref name="SciCompELN">{{cite web \|url=http://www.scientificcomputing.com/articles-IN-Informatics-Convergence-Presents-Opportunities-and-Challenges-111111.aspx \|archiveurl=https://web.archive.org/web/20160417085757/https://www.scientificcomputing.com/articles/2011/11/informatics-convergence-presents-opportunities-and-challenges \|author=Elliot, Michael H. \|title=Informatics Convergence Presents Opportunities and Challenges \|publisher=Scientific Computing \|date=October 2011 \|archivedate=17 April 2016 \|accessdate=17 March 2020}}</ref> More than a decade later, the ELN has become more distinct in purpose and functionality and is typically sold as a stand-alone solution. However, some vendors such as [[Vendor:Genohm SA\|Genohm]] have decided to integrate ELN functionality into their solution in order to provide greater flexibility to researchers.<ref name="GenohmHome">{{cite web \|url=https://www.genohm.com/ \|title=SLIMS: Manage your lab data in one place \|publisher=Genohm SA \|accessdate=17 March 2020}}</ref> While it has been more common to see this sort of melding in a LIMS, it has been less common in the LIS. Yet some LIS may include some sort of integration or compatibility with an ELN, and thusly this functionality is at least mentioned.

	===Export to MS Excel===		===Export to MS Excel===

Shawndouglas: Text replacement - "\[\[Bytewize AB(.*)" to "[[Vendor:Bytewize AB$1"

2024-03-29T16:07:54Z

Text replacement - "\[\[Bytewize AB(.*)" to "[[Vendor:Bytewize AB$1"

← Older revision		Revision as of 16:07, 29 March 2024
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	===Usage-based cost===		===Usage-based cost===

	While rare, some LIMS vendors allow potential clients to license and utilize the vendor's software under a usage-based cost model. An example of this model in use is Bytewize AB's [[Bytewize AB#O3 Lims and O3 LimsXpress\|O3 LimsXpress]], which has a cost directly related to the amount of samples processed each month.<ref name="BWO3X">{{cite web \|url=https://www.bytewize.com/o3limsxpress \|title=O3 LimsXpress \|publisher=Bytewize AB \|accessdate=18 March 2020}}</ref> You may also see this sort of usage-based cost on some cloud-based LIMS.		While rare, some LIMS vendors allow potential clients to license and utilize the vendor's software under a usage-based cost model. An example of this model in use is Bytewize AB's [[Vendor:Bytewize AB#O3 Lims and O3 LimsXpress\|O3 LimsXpress]], which has a cost directly related to the amount of samples processed each month.<ref name="BWO3X">{{cite web \|url=https://www.bytewize.com/o3limsxpress \|title=O3 LimsXpress \|publisher=Bytewize AB \|accessdate=18 March 2020}}</ref> You may also see this sort of usage-based cost on some cloud-based LIMS.

	</div>		</div>

Shawndouglas: /* Quality, security, and compliance */ Spacing

2022-01-18T18:39:59Z

Quality, security, and compliance: Spacing

← Older revision		Revision as of 18:39, 18 January 2022
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	As with an [[audit trail]], a laboratory depends on recorded information like user ID, time stamp, and location ID to maintain a robust and accurate COC. [[LIS feature#Barcode support\|Barcodes]], [[LIS feature#Inventory management\|inventory management]], and [[LIS feature#Configurable roles and security\|configurable security roles]] all play an important part in maintaining chain of custody.		As with an [[audit trail]], a laboratory depends on recorded information like user ID, time stamp, and location ID to maintain a robust and accurate COC. [[LIS feature#Barcode support\|Barcodes]], [[LIS feature#Inventory management\|inventory management]], and [[LIS feature#Configurable roles and security\|configurable security roles]] all play an important part in maintaining chain of custody.


	===Configurable roles and security===		===Configurable roles and security===

Shawndouglas: /* Messaging */ Flowlist

2022-01-18T18:23:48Z

Messaging: Flowlist

← Older revision		Revision as of 18:23, 18 January 2022
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	The messaging feature of an LIS may refer to one of two (or both) things:		The messaging feature of an LIS may refer to one of two (or both) things:
			{{flowlist \|
	*a built-in instant messaging system that allows users to converse with each other through text messages real-time, or		*a built-in instant messaging system that allows users to converse with each other through text messages real-time, or
	*SMS text messaging integration that allows users or the LIMS itself to send messages or alerts to a user's mobile or smart phone.		*SMS text messaging integration that allows users or the LIMS itself to send messages or alerts to a user's mobile or smart phone.
			}}

	===Commenting===		===Commenting===

Shawndouglas: /* Workflow management */ Flowlist

2022-01-18T18:23:18Z

Workflow management: Flowlist

← Older revision		Revision as of 18:23, 18 January 2022
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	Modern commercial and open-source LIS solutions recognize clinical laboratory workflow often has its own share of requirements, requiring specific workflow management functionality, including<ref name="WFLIS">{{cite web \|url=http://www.labcompare.com/10-Featured-Articles/19389-Harnessing-Laboratory-Information-Systems-to-Support-Increased-Capacity-and-Staff-Productivity/ \|archiveurl=https://web.archive.org/web/20150921215023/http://www.labcompare.com/10-Featured-Articles/19389-Harnessing-Laboratory-Information-Systems-to-Support-Increased-Capacity-and-Staff-Productivity/ \|title=Harnessing Laboratory Information Systems to Support Increased Capacity and Staff Productivity \|author=Feist, K. \|work=LabCompare \|date=22 July 2011 \|archivedate=21 September 2015 \|accessdate=18 March 2020}}</ref>:		Modern commercial and open-source LIS solutions recognize clinical laboratory workflow often has its own share of requirements, requiring specific workflow management functionality, including<ref name="WFLIS">{{cite web \|url=http://www.labcompare.com/10-Featured-Articles/19389-Harnessing-Laboratory-Information-Systems-to-Support-Increased-Capacity-and-Staff-Productivity/ \|archiveurl=https://web.archive.org/web/20150921215023/http://www.labcompare.com/10-Featured-Articles/19389-Harnessing-Laboratory-Information-Systems-to-Support-Increased-Capacity-and-Staff-Productivity/ \|title=Harnessing Laboratory Information Systems to Support Increased Capacity and Staff Productivity \|author=Feist, K. \|work=LabCompare \|date=22 July 2011 \|archivedate=21 September 2015 \|accessdate=18 March 2020}}</ref>:
			{{flowlist \|
	*managing the request cycle within a laboratory		*managing the request cycle within a laboratory
	*organizing and executing diagnostic testing		*organizing and executing diagnostic testing
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	*dynamically modifying workflow in case of future changes		*dynamically modifying workflow in case of future changes
	*receiving notification of changes to the workflow		*receiving notification of changes to the workflow
			}}

	===Specification management===		===Specification management===

Shawndouglas: /* Audit trail */ Flowlist

2022-01-18T18:22:51Z

Audit trail: Flowlist

← Older revision		Revision as of 18:22, 18 January 2022
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	Information recorded in the audit trail typically includes:		Information recorded in the audit trail typically includes:
			{{flowlist \|
	*operator code		*operator code
	*time stamp		*time stamp
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	*user notes (e.g., reason for change)		*user notes (e.g., reason for change)
	*in some cases, data in temporary memory<ref name="LVData19">{{cite web \|url=https://www.labvantage.com/data-integrity-is-here-what-does-it-mean-for-cmos/ \|title=Data Integrity is Here. What Does it Mean for CMOs? \|author=LabVantage Solutions \|work=LabVantage Blog \|date=14 September 2019 \|accessdate=18 March 2020}}</ref>		*in some cases, data in temporary memory<ref name="LVData19">{{cite web \|url=https://www.labvantage.com/data-integrity-is-here-what-does-it-mean-for-cmos/ \|title=Data Integrity is Here. What Does it Mean for CMOs? \|author=LabVantage Solutions \|work=LabVantage Blog \|date=14 September 2019 \|accessdate=18 March 2020}}</ref>
			}}
	<br />		<br />

Shawndouglas: /* Experiment, patient, and data management */ Spacing

2022-01-18T18:21:35Z

Experiment, patient, and data management: Spacing

← Older revision		Revision as of 18:21, 18 January 2022
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	While not described as a feature on most LIS vendor websites, a few indicate their product is capable of managing (import, export, editing, etc.) data in its raw format for future analysis. This raw data is typically implied to be originating from instruments that interface with the LIS, which in itself is not unusual. That raw data may remain housed in instruments, getting transformed into reportable data in the LIS, but presumably most LIS are also capable of housing the raw instrument data as well.<ref name="SSLisa">{{cite web \|url=http://www.sigmaplot.co.uk/products/lisa/index.php \|title=LISA.lims - The Premier LIMS Solution \|publisher=Systat Software, Inc \|accessdate=06 January 2022}}</ref> Clinical research labs may also turn to [[scientific data management system]]s to better manage their raw data sources.<ref name="CSolsTheVal19">{{cite web \|url=https://www.csolsinc.com/blog/the-value-of-a-scientific-data-management-system-sdms/ \|title=The Value of a Scientific Data Management System (SDMS) \|author=CSols, Inc \|date=25 July 2019 \|accessdate=17 March 2020}}</ref>		While not described as a feature on most LIS vendor websites, a few indicate their product is capable of managing (import, export, editing, etc.) data in its raw format for future analysis. This raw data is typically implied to be originating from instruments that interface with the LIS, which in itself is not unusual. That raw data may remain housed in instruments, getting transformed into reportable data in the LIS, but presumably most LIS are also capable of housing the raw instrument data as well.<ref name="SSLisa">{{cite web \|url=http://www.sigmaplot.co.uk/products/lisa/index.php \|title=LISA.lims - The Premier LIMS Solution \|publisher=Systat Software, Inc \|accessdate=06 January 2022}}</ref> Clinical research labs may also turn to [[scientific data management system]]s to better manage their raw data sources.<ref name="CSolsTheVal19">{{cite web \|url=https://www.csolsinc.com/blog/the-value-of-a-scientific-data-management-system-sdms/ \|title=The Value of a Scientific Data Management System (SDMS) \|author=CSols, Inc \|date=25 July 2019 \|accessdate=17 March 2020}}</ref>


	===Data warehouse===		===Data warehouse===