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File:Fig2 Williams JofPathInformatics2016 7.jpg - Revision history
2026-04-05T15:53:42Z
Revision history for this page on the wiki
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Shawndouglas: Updated.
2016-12-20T21:50:57Z
<p>Updated.</p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 21:50, 20 December 2016</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Summary==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Summary==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Information</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Information</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|Description='''Figure <del style="font-weight: bold; text-decoration: none;">4</del>.''' <del style="font-weight: bold; text-decoration: none;">(</del>a<del style="font-weight: bold; text-decoration: none;">) Microsoft Word table rendition of portion of R data frame showing the four columns of retrieved data and one column of generated element</del>. <del style="font-weight: bold; text-decoration: none;">The first four columns such as "accession_no," "patient_id," "created_date," and "finding_text" are data retrieved </del>from <del style="font-weight: bold; text-decoration: none;">PowerPath database</del>. <del style="font-weight: bold; text-decoration: none;">The 5th column "cannotupdate" is used subsequently to determine if updated staging information will be obtained from the subsequent reports. The content of "finding_text" contains large chunks of text data including the synoptic reports; only the first few words are displayed in the table. (b) Microsoft Word table rendition showing portion of an R data frame containing two columns of extracted elements and one column of tidy data (BreslowDepth[mm]) derived from the first two columns</del>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|Description='''Figure <ins style="font-weight: bold; text-decoration: none;">2</ins>.''' <ins style="font-weight: bold; text-decoration: none;">Example configuration file for </ins>a <ins style="font-weight: bold; text-decoration: none;">simple container providing a MySQL client service</ins>. <ins style="font-weight: bold; text-decoration: none;">Adapted </ins>from <ins style="font-weight: bold; text-decoration: none;">https://hub</ins>.<ins style="font-weight: bold; text-decoration: none;">docker</ins>.<ins style="font-weight: bold; text-decoration: none;">com/r/ gliderlabs/alpine</ins></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|Source={{cite journal |journal=Journal of Pathology Informatics |title=<del style="font-weight: bold; text-decoration: none;">Pathology report data extraction from relational database using R, with extraction from reports on melanoma of skin as an example </del>|author=<del style="font-weight: bold; text-decoration: none;">Ye</del>, J.J. |volume=7 |pages=<del style="font-weight: bold; text-decoration: none;">44 </del>|year=2016 |doi=10.4103/2153-3539.<del style="font-weight: bold; text-decoration: none;">192822</del>}}</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|Source={{cite journal |journal=Journal of Pathology Informatics |title=<ins style="font-weight: bold; text-decoration: none;">The growing need for microservices in bioinformatics </ins>|author=<ins style="font-weight: bold; text-decoration: none;">Williams, C.L.; Sica</ins>, J<ins style="font-weight: bold; text-decoration: none;">.C.; Killen, R.T.; Balis, U.G</ins>.J. |volume=7 |pages=<ins style="font-weight: bold; text-decoration: none;">45 </ins>|year=2016 |doi=10.4103/2153-3539.<ins style="font-weight: bold; text-decoration: none;">194835</ins>}}</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|Author=<del style="font-weight: bold; text-decoration: none;">Ye</del>, J.J.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|Author=<ins style="font-weight: bold; text-decoration: none;">Williams, C.L.; Sica</ins>, J<ins style="font-weight: bold; text-decoration: none;">.C.; Killen, R.T.; Balis, U.G</ins>.J.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|Date=2016</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|Date=2016</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|Permission=[http://creativecommons.org/licenses/by-nc-sa/3.0/ Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|Permission=[http://creativecommons.org/licenses/by-nc-sa/3.0/ Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported]</div></td></tr>
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Shawndouglas
https://www.limswiki.org/index.php?title=File:Fig2_Williams_JofPathInformatics2016_7.jpg&diff=28803&oldid=prev
Shawndouglas: Testing summary
2016-12-20T21:49:29Z
<p>Testing summary</p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 21:49, 20 December 2016</td>
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<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">==Summary==</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">{{Information</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">|Description='''Figure 4.''' (a) Microsoft Word table rendition of portion of R data frame showing the four columns of retrieved data and one column of generated element. The first four columns such as "accession_no," "patient_id," "created_date," and "finding_text" are data retrieved from PowerPath database. The 5th column "cannotupdate" is used subsequently to determine if updated staging information will be obtained from the subsequent reports. The content of "finding_text" contains large chunks of text data including the synoptic reports; only the first few words are displayed in the table. (b) Microsoft Word table rendition showing portion of an R data frame containing two columns of extracted elements and one column of tidy data (BreslowDepth[mm]) derived from the first two columns.</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">|Source={{cite journal |journal=Journal of Pathology Informatics |title=Pathology report data extraction from relational database using R, with extraction from reports on melanoma of skin as an example |author=Ye, J.J. |volume=7 |pages=44 |year=2016 |doi=10.4103/2153-3539.192822}}</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">|Author=Ye, J.J.</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">|Date=2016</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">|Permission=[http://creativecommons.org/licenses/by-nc-sa/3.0/ Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported]</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">}}</ins></div></td></tr>
<tr><td colspan="2"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Licensing ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Licensing ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{cc-by-nc-sa-3.0}}</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{cc-by-nc-sa-3.0}}</div></td></tr>
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Shawndouglas
https://www.limswiki.org/index.php?title=File:Fig2_Williams_JofPathInformatics2016_7.jpg&diff=28801&oldid=prev
Shawndouglas at 21:44, 20 December 2016
2016-12-20T21:44:29Z
<p></p>
<p><b>New page</b></p><div>== Licensing ==<br />
{{cc-by-nc-sa-3.0}}</div>
Shawndouglas