Book:Next-Generation Sequencing: A Brief Introduction - Revision history

Shawndouglas: Updated so new print method will work

2018-12-07T15:04:33Z

Updated so new print method will work

Shawndouglas: Fixed title

2016-05-05T00:02:06Z

Fixed title

← Older revision		Revision as of 00:02, 5 May 2016
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	;5. Next-Generation Sequencing Research and Technology		;5. Next-Generation Sequencing Research and Technology

	:[[LII:Next Generation Sequencing (NGS)/Genome Wide Association Studies\|Genome-wide association studies: An introduction]]		:[[LII:Next Generation Sequencing (NGS)/Genome-Wide Association Studies\|Genome-wide association studies: An introduction]]
	:[[Genome-wide association study\|The genome-wide association study]]		:[[Genome-wide association study\|The genome-wide association study]]
	:[[LII:Next Generation Sequencing (NGS)/Integrative platforms\|Open-source integrative platforms]]		:[[LII:Next Generation Sequencing (NGS)/Integrative platforms\|Open-source integrative platforms]]

Shawndouglas: Created as needed.

2016-04-28T17:28:58Z

Created as needed.

← Older revision		Revision as of 17:28, 28 April 2016
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	<!--Place all category tags here-->		<!--Place all category tags here-->
	[[Category:LIMSwiki books on ~~medical devices~~]]		[[Category:LIMSwiki books on informatics]]
	[[Category:LIMSwiki books on ~~software~~]]		[[Category:LIMSwiki books on science]]

Shawndouglas: Recreated, per John

2016-04-28T15:58:31Z

Recreated, per John

New page

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|title=Next-Generation Sequencing
|subtitle=A Brief Introduction
|cover-image=Sanger-sequencing.svg
|cover-color=#f1e2d3
| setting-papersize = A4
| setting-showtoc = 1
| setting-columns = 1
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==''Next-Generation Sequencing: A Brief Introduction''==
The goal of this short volume is to act as "a collective lab book that explains the key concepts and describes best practices in NGS" or next generation sequencing. The content [[wikibooks::Next Generation Sequencing (NGS)|originates from Wikibooks]] and is made available under the [https://creativecommons.org/licenses/by-sa/3.0/ Creative Commons Attribution-ShareAlike 3.0 Unported] license.

;1. What Is DNA and Next-Generation Sequencing?

:[[LII:Structural Biochemistry/DNA recombinant techniques/DNA sequencing|Basics of DNA sequencing]]
:[[DNA sequencing|Advanced DNA sequencing and next-generation methods]]
:[[LII:Next Generation Sequencing (NGS)/Introduction|Next-generation sequencing technologies and terminology]]
:[[LII:Next Generation Sequencing (NGS)/Big Data|NGS and big data]]

;2. Bioinformatics Interfaces for Next-Generation Sequencing

:[[LII:Next Generation Sequencing (NGS)/Bioinformatics from the outside|Bioinformatics from the outside]]
:[[LII:Next Generation Sequencing (NGS)/Pre-processing|Pre-processing of NGS data]]

;3. Next-Generation Sequencing Using a Reference Genome

:[[LII:Next Generation Sequencing (NGS)/Alignment|Alignment]]
:[[LII:Next Generation Sequencing (NGS)/DNA Variants|DNA variants]]
:[[LII:Next Generation Sequencing (NGS)/RNA|RNA]]
:[[LII:Next Generation Sequencing (NGS)/Epigenetics|Epigenetics]]
:[[LII:Next Generation Sequencing (NGS)/Metagenomics|Metagenomics]]

;4. Next-Generation Sequencing without a Reference Genome

:[[LII:Next Generation Sequencing (NGS)/De novo assembly|''De novo'' genome assembly]]
:[[LII:Next Generation Sequencing (NGS)/De novo RNA assembly|''De novo'' RNA assembly]]

;5. Next-Generation Sequencing Research and Technology

:[[LII:Next Generation Sequencing (NGS)/Genome Wide Association Studies|Genome-wide association studies: An introduction]]
:[[Genome-wide association study|The genome-wide association study]]
:[[LII:Next Generation Sequencing (NGS)/Integrative platforms|Open-source integrative platforms]]

;6. The Rest
:[[LII:Next Generation Sequencing (NGS)/Authors|Contributing authors]]


[[Category:LIMSwiki books on medical devices]]
[[Category:LIMSwiki books on software]]

← Older revision		Revision as of 15:04, 7 December 2018
Line 13:		Line 13:

	;1. What Is DNA and Next-Generation Sequencing?		;1. What Is DNA and Next-Generation Sequencing?

	:[[LII:Structural Biochemistry/DNA recombinant techniques/DNA sequencing\|Basics of DNA sequencing]]		:[[LII:Structural Biochemistry/DNA recombinant techniques/DNA sequencing\|Basics of DNA sequencing]]
	:[[DNA sequencing\|Advanced DNA sequencing and next-generation methods]]		:[[DNA sequencing\|Advanced DNA sequencing and next-generation methods]]
	:[[LII:Next Generation Sequencing (NGS)/Introduction\|Next-generation sequencing technologies and terminology]]		:[[LII:Next Generation Sequencing (NGS)/Introduction\|Next-generation sequencing technologies and terminology]]
	:[[LII:Next Generation Sequencing (NGS)/Big Data\|NGS and big data]]		:[[LII:Next Generation Sequencing (NGS)/Big Data\|NGS and big data]]

	;2. Bioinformatics Interfaces for Next-Generation Sequencing		;2. Bioinformatics Interfaces for Next-Generation Sequencing

	:[[LII:Next Generation Sequencing (NGS)/Bioinformatics from the outside\|Bioinformatics from the outside]]		:[[LII:Next Generation Sequencing (NGS)/Bioinformatics from the outside\|Bioinformatics from the outside]]
	:[[LII:Next Generation Sequencing (NGS)/Pre-processing\|Pre-processing of NGS data]]		:[[LII:Next Generation Sequencing (NGS)/Pre-processing\|Pre-processing of NGS data]]

	;3. Next-Generation Sequencing Using a Reference Genome		;3. Next-Generation Sequencing Using a Reference Genome

	:[[LII:Next Generation Sequencing (NGS)/Alignment\|Alignment]]		:[[LII:Next Generation Sequencing (NGS)/Alignment\|Alignment]]
	:[[LII:Next Generation Sequencing (NGS)/DNA Variants\|DNA variants]]		:[[LII:Next Generation Sequencing (NGS)/DNA Variants\|DNA variants]]
Line 31:		Line 26:
	:[[LII:Next Generation Sequencing (NGS)/Epigenetics\|Epigenetics]]		:[[LII:Next Generation Sequencing (NGS)/Epigenetics\|Epigenetics]]
	:[[LII:Next Generation Sequencing (NGS)/Metagenomics\|Metagenomics]]		:[[LII:Next Generation Sequencing (NGS)/Metagenomics\|Metagenomics]]

	;4. Next-Generation Sequencing without a Reference Genome		;4. Next-Generation Sequencing without a Reference Genome

	:[[LII:Next Generation Sequencing (NGS)/De novo assembly\|''De novo'' genome assembly]]		:[[LII:Next Generation Sequencing (NGS)/De novo assembly\|''De novo'' genome assembly]]
	:[[LII:Next Generation Sequencing (NGS)/De novo RNA assembly\|''De novo'' RNA assembly]]		:[[LII:Next Generation Sequencing (NGS)/De novo RNA assembly\|''De novo'' RNA assembly]]

	;5. Next-Generation Sequencing Research and Technology		;5. Next-Generation Sequencing Research and Technology

	:[[LII:Next Generation Sequencing (NGS)/Genome-Wide Association Studies\|Genome-wide association studies: An introduction]]		:[[LII:Next Generation Sequencing (NGS)/Genome-Wide Association Studies\|Genome-wide association studies: An introduction]]
	:[[Genome-wide association study\|The genome-wide association study]]		:[[Genome-wide association study\|The genome-wide association study]]
	:[[LII:Next Generation Sequencing (NGS)/Integrative platforms\|Open-source integrative platforms]]		:[[LII:Next Generation Sequencing (NGS)/Integrative platforms\|Open-source integrative platforms]]

	;6. The Rest		;6. The Rest
	:[[LII:Next Generation Sequencing (NGS)/Authors\|Contributing authors]]		:[[LII:Next Generation Sequencing (NGS)/Authors\|Contributing authors]]