AdLIMS - Revision history

Shawndouglas: Abandoned

2021-05-06T17:54:38Z

Abandoned

← Older revision		Revision as of 17:54, 6 May 2021
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	\| developer = Giulio Spinozzi		\| developer = Giulio Spinozzi
	\| released = {{Start date\|2014\|03\|20}} (20140320)<ref name="SFadLIMS">{{cite web \|url=http://sourceforge.net/projects/adlims/ \|title=adLIMS \|publisher=SourceForge \|accessdate=15 December 2015}}</ref>		\| released = {{Start date\|2014\|03\|20}} (20140320)<ref name="SFadLIMS">{{cite web \|url=http://sourceforge.net/projects/adlims/ \|title=adLIMS \|publisher=SourceForge \|accessdate=15 December 2015}}</ref>
	\| discontinued =		\| discontinued = Yes
	\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->		\| frequently updated = yes<!-- Release version update? Don't edit this page, just click on the version number! -->
	\| programming language = PL/SQL, Java		\| programming language = PL/SQL, Java
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	\| website = <nowiki>http://sourceforge.net/projects/adlims</nowiki>		\| website = <nowiki>http://sourceforge.net/projects/adlims</nowiki>
	}}		}}
	'''adLIMS''' is a free open-source [[laboratory information management system]] (LIMS) designed for PCR and next-generation sequencing labs. The software is an extension and customization of the [[ADempiere]] open-source enterprise resource planning (ERP) application.		'''adLIMS''' was a free open-source [[laboratory information management system]] (LIMS) designed for PCR and next-generation sequencing labs. The software was an extension and customization of the [[ADempiere]] open-source enterprise resource planning (ERP) application.

	==Product history==		==Product history==
	adLIMS was created out of a need to better streamline the workflow and data that came out of high-throughput integration site monitoring at the San Raffaele Telethon Institute for Gene Therapy. "Because of the huge amount of samples that we process every year, which result in hundreds of millions of sequencing reads," the developers claimed, "we need[ed] to standardize data management and tracking systems, building up a scalable and flexible structure with web-based interfaces..."<ref name="Calabria_adLIMS15">{{cite journal \|title=adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies \|journal=BMC Bioinformatics \|author=Calabria, Andrea; Spinozzi, Giulio; Benedicenti, Fabrizio; Tenderini, Erika; Montini, Eugenio \|volume=16 \|issue=Suppl 9 \|pages=S5 \|year=2015 \|doi=10.1186/1471-2105-16-S9-S5 \|pmid=26051409 \|pmc=PMC4464029 \|accessdate=15 December 2015}}</ref> The team eventually settled on the free, open-source ADempiere ERP as a starting point because of its "high usability and modularity that grants high use-case flexibility and software scalability for custom solutions."<ref name="Calabria_adLIMS15" /> Lead developer Giulio Spinozzi created a SourceForge page for the finished product and uploaded the first version on March 20, 2014. A follow-up version (overwriting the original) arrived on September 24.<ref name="SFadLIMS" />		adLIMS was created out of a need to better streamline the workflow and data that came out of high-throughput integration site monitoring at the San Raffaele Telethon Institute for Gene Therapy. "Because of the huge amount of samples that we process every year, which result in hundreds of millions of sequencing reads," the developers claimed, "we need[ed] to standardize data management and tracking systems, building up a scalable and flexible structure with web-based interfaces..."<ref name="Calabria_adLIMS15">{{cite journal \|title=adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies \|journal=BMC Bioinformatics \|author=Calabria, Andrea; Spinozzi, Giulio; Benedicenti, Fabrizio; Tenderini, Erika; Montini, Eugenio \|volume=16 \|issue=Suppl 9 \|pages=S5 \|year=2015 \|doi=10.1186/1471-2105-16-S9-S5 \|pmid=26051409 \|pmc=PMC4464029 \|accessdate=15 December 2015}}</ref> The team eventually settled on the free, open-source ADempiere ERP as a starting point because of its "high usability and modularity that grants high use-case flexibility and software scalability for custom solutions."<ref name="Calabria_adLIMS15" /> Lead developer Giulio Spinozzi created a SourceForge page for the finished product and uploaded the first version on March 20, 2014. A follow-up version (overwriting the original) arrived on September 24.<ref name="SFadLIMS" />

			As of May 2021, this project hasn't been updated for nearly seven years. The project is presumed abandoned or discontinued.

	==Features==		==Features==
	Features of adLIMS ~~include~~:		Features of adLIMS included:

	* sample management and tracking		* sample management and tracking
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	==Hardware/software requirements==		==Hardware/software requirements==
	The following requirements ~~exist~~ for an installation of adLIMS:		The following requirements existed for an installation of adLIMS:

	* Java 1.6+		* Java 1.6+
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	==Videos, screenshots, and other media==		==Videos, screenshots, and other media==

	* A few screenshots ~~can~~ be found on the SourceForge website.		* A few screenshots could be found on the SourceForge website.

	==Entities using adLIMS==		==Entities using adLIMS==
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:~~Laboratory informatics~~ software ~~(open source)]]~~		[[Category:Discontinued or abandoned software (open source)]]
	~~[[Category:Laboratory information management systems~~ (open source)]]

Shawndouglas at 20:27, 15 December 2015

2015-12-15T20:27:32Z

← Older revision		Revision as of 20:27, 15 December 2015
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	<!---Place all category tags here-->		<!---Place all category tags here-->
	[[Category:Laboratory informatics software (open source)]]		[[Category:Laboratory informatics software (open source)]]
	[[Category:Laboratory information management ~~system~~ (open source)]]		[[Category:Laboratory information management systems (open source)]]

Shawndouglas: Created as needed.

2015-12-15T20:27:00Z

Created as needed.

New page

{{lowercase title}}
{{Infobox software
| name = adLIMS
| title = adLIMS
| logo = [[File:Adlims.png|220px]]
| screenshot = 
| caption =
| collapsible =
| author = Giulio Spinozzi
| developer = Giulio Spinozzi
| released = {{Start date|2014|03|20}} (20140320)<ref name="SFadLIMS">{{cite web |url=http://sourceforge.net/projects/adlims/ |title=adLIMS |publisher=SourceForge |accessdate=15 December 2015}}</ref>
| discontinued =
| frequently updated = yes
| programming language = PL/SQL, Java
| operating system = Cross-platform
| platform =
| size =
| language =
| status =
| genre = [[Laboratory informatics]] software
| license = GNU General Public License v2.0
| website = <nowiki>http://sourceforge.net/projects/adlims</nowiki>
}}
'''adLIMS''' is a free open-source [[laboratory information management system]] (LIMS) designed for PCR and next-generation sequencing labs. The software is an extension and customization of the [[ADempiere]] open-source enterprise resource planning (ERP) application.

==Product history==
adLIMS was created out of a need to better streamline the workflow and data that came out of high-throughput integration site monitoring at the San Raffaele Telethon Institute for Gene Therapy. "Because of the huge amount of samples that we process every year, which result in hundreds of millions of sequencing reads," the developers claimed, "we need[ed] to standardize data management and tracking systems, building up a scalable and flexible structure with web-based interfaces..."<ref name="Calabria_adLIMS15">{{cite journal |title=adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies |journal=BMC Bioinformatics |author=Calabria, Andrea; Spinozzi, Giulio; Benedicenti, Fabrizio; Tenderini, Erika; Montini, Eugenio |volume=16 |issue=Suppl 9 |pages=S5 |year=2015 |doi=10.1186/1471-2105-16-S9-S5 |pmid=26051409 |pmc=PMC4464029 |accessdate=15 December 2015}}</ref> The team eventually settled on the free, open-source ADempiere ERP as a starting point because of its "high usability and modularity that grants high use-case flexibility and software scalability for custom solutions."<ref name="Calabria_adLIMS15" /> Lead developer Giulio Spinozzi created a SourceForge page for the finished product and uploaded the first version on March 20, 2014. A follow-up version (overwriting the original) arrived on September 24.<ref name="SFadLIMS" />

==Features==
Features of adLIMS include:

* sample management and tracking
* experiment management
* administration management
* automated data entry
* reporting
* data backup
* export to PDF, XLS, CSV, etc.
* support for client-side interfaces

==Hardware/software requirements==
The following requirements exist for an installation of adLIMS:

* Java 1.6+
* [[PostgreSQL]] 9+

==Videos, screenshots, and other media==

* A few screenshots can be found on the SourceForge website.

==Entities using adLIMS==
San Raffaele Telethon Institute for Gene Therapy

==Further reading==
* {{cite journal |title=adLIMS: A customized open source software that allows bridging clinical and basic molecular research studies |journal=BMC Bioinformatics |author=Calabria, Andrea; Spinozzi, Giulio; Benedicenti, Fabrizio; Tenderini, Erika; Montini, Eugenio |volume=16 |issue=Suppl 9 |pages=S5 |year=2015 |doi=10.1186/1471-2105-16-S9-S5 |pmid=26051409 |pmc=PMC4464029}}

==External links==
* adLIMS can be found on SourceForge. However, use caution when downloading and installing from there; the install package may contain undesirable add-on software.

==References==
<references />


[[Category:Laboratory informatics software (open source)]]
[[Category:Laboratory information management system (open source)]]