Search results

• Journal:From command-line bioinformatics to bioGUI
  ...e to bioGUI’s support for Windows Subsystem for Linux. In addition, bioGUI templates can easily be created, making the bioGUI framework highly rewarding for dev ...x. bioGUI also addresses protocol/parameter management by saving completed templates, enabling easy reproducibility of data analyses (Fig. 1).
  97 KB (13,006 words) - 00:53, 7 January 2020
• Journal:Electronic lab notebooks: Can they replace paper
  ...nd the internet, the web in particular.<ref name="BoultonScience12">{{cite book |url=https://royalsociety.org/~/media/Royal_Society_Content/policy/projects ...7 |accessdate=03 February 2017}}</ref><ref name="TaylorEvolution11">{{cite book |title=Collaborative Computational Technologies for Biomedical Research |ch
  85 KB (11,635 words) - 18:49, 11 April 2024
• Book:Choosing and Implementing a Cloud-based Service for Your Laboratory
  {{Saved book ...endix 1 and 2), as well as providing example request for information (RFI) templates for both provider types (Appendix 3). While this guide can prove useful to
  9 KB (1,136 words) - 20:55, 16 August 2023
• LIS feature
  ...accessioning includes, but is not limited to<ref name="LabTechBook">{{cite book |url=https://books.google.com/books?id=qMgAbOHSlsMC&pg=PA8&lpg=PA8 |title=B This category ties in with the [[#Configurable templates and forms|custom templates and forms]] functionality apparent in some LIS, providing both custom and s
  73 KB (10,473 words) - 01:16, 5 April 2024
• Journal:Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation
  ...ublished at [https://www.protocols.io/ protocols.io]. While those protocol templates do encode a list of abstract instructions, they do not necessarily reflect ...ssn=1471-2105 |pmc=PMC4255744 |pmid=25472549}}</ref><ref name=":10">{{Cite book |last=Giraldo Pasmín, O.X., Corcho, O.; Castro, A.G., |year=2014 |title=Li
  124 KB (16,896 words) - 16:29, 29 April 2024
• Journal:SystemPipeR: NGS workflow and report generation environment
  ...emplates for RNA-Seq, ChIP-Seq, VAR-Seq, and Ribo-Seq. Additional workflow templates will be provided in the future. ...ples of command-line software used by systemPipeR’s preconfigured workflow templates (see below) include the aligners BWA-MEM<ref name="LiAligning13">{{cite web
  46 KB (6,269 words) - 20:15, 27 August 2018
• ELN feature
  [[File:Lab book - Lawrence Berkeley National Laboratory - DSC08822.JPG|thumb|300px|ELNs are ===Configurable templates and forms===
  61 KB (8,819 words) - 18:09, 12 April 2024
• Journal:Handling metadata in a neurophysiology laboratory
  ...e generally defined as data describing data.<ref name="BacaIntro08">{{cite book |url=http://www.getty.edu/publications/intrometadata/ |title=Introduction t ...c workflow for generating odML files in the reach-to-grasp experiment. The Templates box (top): illustrates three out of six template parts which are used to bu
  88 KB (13,049 words) - 18:41, 22 December 2017
• Journal:Electronic laboratory notebooks in a public–private partnership
  • Create and share templates for experimental documentation<br /> ...s a highly structured multi-phase procedure<ref name="NehmeElect06">{{cite book |chapter=9. Electronic Laboratory Notebooks |title=Computer Applications in
  80 KB (10,946 words) - 22:44, 12 September 2017
• Journal:Eleven quick tips for architecting biomedical informatics workflows with cloud computing
  ...mputational stack they describe, allowing developers to modify and improve templates without invoking costs. ...n cloud computing because it applies not only to the software, but also to templates that describe virtualized hardware and networks.
  42 KB (6,067 words) - 20:36, 26 June 2018
• Journal:Sample identifiers and metadata to support data management and reuse in multidisciplinary ecosystem sciences
  ...publisher=DCMI |accessdate=16 September 2020}}</ref><ref name=":21">{{Cite book |last=Cox |first=Simon Jonathan David |date=2011 |title=ISO 19156:2011 - Ge ...translation table comparing metadata elements from existing standards and templates):
  98 KB (13,366 words) - 16:40, 29 April 2024
• Journal:Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO)
  ...gate the use of computational techniques to help investigators to assemble templates and to fill in their values.<ref name="MusenTheCenter15" /> ...iables in large databases.<ref name="Piatestsky-ShapiroKnowledge91">{{cite book |chapter=Chapter 13: Discovery, analysis, and presentation of strong rules
  51 KB (7,302 words) - 16:16, 23 August 2017
• Journal:SODAR: Managing multiomics study data and metadata
  ...8 |pmid=31691833}}</ref>, and Gene Expression Omnibus<ref name=":4">{{Cite book |date=2016 |editor-last=Mathé |editor-first=Ewy |editor2-last=Davis |edito ...r-friendly GUI-based creation of sample sheets from ISA-Tab templates. The templates aid in maintaining consistent metadata structures between studies. Once cre
  61 KB (8,704 words) - 16:14, 29 March 2024
• Journal:Kadi4Mat: A research data infrastructure for materials science
  ..., filed under the keyword "data science."<ref name="HeyTheFourth09">{{cite book |title=The Fourth Paradigm: Data-Intensive Scientific Discovery |author=Hey ...gky379}}</ref> or [[Jupyter Notebook]].<ref name="KluyverJupyter16">{{cite book |chapter=Jupyter Notebooks—A publishing format for reproducible computati
  54 KB (7,990 words) - 20:11, 24 February 2021
• Book:Choosing and Implementing a Cloud-based Service for Your Laboratory/Introduction
  ...endix 1 and 2), as well as providing example request for information (RFI) templates for both provider types (Appendix 3). While this guide can prove useful to [[Book:Choosing and Implementing a Cloud-based Service for Your Laboratory/What is
  6 KB (827 words) - 20:57, 16 August 2023
• Journal:One tool to find them all: A case of data integration and querying in a distributed LIMS platform
  ...ly handle the large amounts of data produced.<ref name="ChenLIMS16">{{cite book |chapter=Chapter 9: LIMS and Clinical Data Management |title=Translational ...a graph, and stored in a graph database.<ref name="VukoticNeo4j14">{{cite book |title=Neo4j in Action |author=Vukotic, A.; Watt, N.; Abedrabbo, T. et al.
  56 KB (7,972 words) - 22:15, 4 April 2024
• Journal:ILAP: A workflow-driven software for experimental protocol development, data acquisition and analysis
  ...ocation=Indianapolis, IN |year=2000}}</ref><ref name="JohnsonWeb03">{{cite book |title=Web Bloopers: 60 Common Web Design Mistakes and How to Avoid Them |a ...onality but J2EE infrastructure services<ref name="JohnsonExpert04">{{cite book |title=Expert One-on-One J2EE Development without EJB |author=Johnson, R.;
  56 KB (7,883 words) - 19:57, 19 September 2021
• Journal:Digitalization of calibration data management in the pharmaceutical industry using a multitenant platform
  ...ent unit system are established through calibrations.<ref name=":4">{{Cite book |date=2008 |editor-last=Howarth |editor-first=Preben |editor2-last=EUROMET, ...and [[audit trail]]s for the processes are required.<ref name=":8">{{Cite book |year=2017 |title=ISPE GAMP Guide: Records and Data Integrity |url=https://
  101 KB (14,131 words) - 21:01, 1 March 2023
• Journal:Infrastructure tools to support an effective radiation oncology learning health system
  ...ery as an integral part for practicing evidence-based medicine.<ref>{{Cite book |date=2007-06-01 |title=The Learning Healthcare System: Workshop Summary (I ...ents receiving radiotherapy. The system uses disease site-specific “smart” templates to facilitate the entry of relevant clinical information by physicians and
  111 KB (15,368 words) - 21:08, 20 May 2024
• Journal:A pocket guide to electronic laboratory notebooks in the academic life sciences
  ...ged since pre-modern science (Figure 1).<ref name="KanareWriting85">{{cite book |url=http://eric.ed.gov/?id=ED344734 |title=Writing the Laboratory Notebook ...versions controlled. Protocols used frequently can simply be integrated as templates. Project progress and ELN use can be easily monitored by group or project l
  43 KB (6,436 words) - 19:05, 12 April 2024

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